DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh2 and opn7b

DIOPT Version :9

Sequence 1:NP_524398.1 Gene:Rh2 / 42261 FlyBaseID:FBgn0003248 Length:381 Species:Drosophila melanogaster
Sequence 2:NP_001303878.1 Gene:opn7b / 100332167 ZFINID:ZDB-GENE-130530-850 Length:398 Species:Danio rerio


Alignment Length:347 Identity:95/347 - (27%)
Similarity:154/347 - (44%) Gaps:47/347 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 DPMMSKI-------LGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ 110
            |...|||       ||.......::|..||..::::....||...||.|.::||:.||..|....
Zfish     8 DLFQSKISKENDLLLGTIYSIFGVLSLMGNSTLLFVAYRKKSSLKPAELFIINLSISDLGMTVFL 72

  Fly   111 SPVMIINFYYETWVLGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGINGTPMTIKTSIM 175
            .|..|.:.:...|:...:.|..||.||.|||..|:.::.:::...:..:.....|...:...:.:
Zfish    73 FPFAIPSAFAHKWLFTEVMCMCYAFCGVLFGLCSLSNLTVLSCVCWLKVCCPNYGNKFSSCHARL 137

  Fly   176 KILFIWMMAVFWTVMPLIGWSAYVPEGNLTACSIDYMTRMWNPRS-------YLITYSLFVYYTP 233
            .::.:|..|..:.|.||.||..|..|...|||.||     |:..|       |::....|.|..|
Zfish   138 LVVGVWCYAAVFAVGPLSGWGQYGSEPYGTACCID-----WHAPSSSTPAMIYIVCLFFFCYIVP 197

  Fly   234 LFLICYSYWFIIAAVAAHEKAMRE----QAKKMNVKSLRSSEDCDKSAEGKLAKVALTTISLWFM 294
            ..:|..||..|:..|...:.|:::    |.|..||::|             |.|:::.....:.|
Zfish   198 CCVIILSYSLILVTVRGAQHAVQQHVSPQNKISNVQTL-------------LVKLSVAVCFGFLM 249

  Fly   295 AWTPYLVICYFGLF-KIDGLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVL--------KEK 350
            ||:||.|:..:..| :.|.:.|:.....|.|||:|.:|||:||.:..|.:|..|        ::.
Zfish   250 AWSPYAVVSMWAAFTEPDLVPPIAFALAAMFAKSSTLYNPMVYLVFKPSFRKSLCRDATKCKRKL 314

  Fly   351 CPMCVFGNTDEPKPDAPASDTE 372
            || ||. .||......|:.:|:
Zfish   315 CP-CVC-QTDTQHQGTPSLNTK 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh2NP_524398.1 7tm_4 67..>237 CDD:304433 46/176 (26%)
7tm_1 74..336 CDD:278431 75/273 (27%)
opn7bNP_001303878.1 7tmA_Opsin5_neuropsin 20..303 CDD:320202 82/300 (27%)
TM helix 1 21..47 CDD:320202 5/25 (20%)
TM helix 2 54..81 CDD:320202 9/26 (35%)
TM helix 3 92..122 CDD:320202 9/29 (31%)
TM helix 4 135..153 CDD:320202 3/17 (18%)
TM helix 5 182..212 CDD:320202 8/29 (28%)
TM helix 6 231..261 CDD:320202 11/42 (26%)
TM helix 7 271..296 CDD:320202 11/24 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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