DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh2 and ccr3

DIOPT Version :10

Sequence 1:NP_524398.1 Gene:Rh2 / 42261 FlyBaseID:FBgn0003248 Length:381 Species:Drosophila melanogaster
Sequence 2:NP_001107334.1 Gene:ccr3 / 100135154 XenbaseID:XB-GENE-5897823 Length:345 Species:Xenopus tropicalis


Alignment Length:310 Identity:65/310 - (20%)
Similarity:114/310 - (36%) Gaps:73/310 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 FTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQSPVMIINFYYET-WVLG 126
            |...:..:|..|||:::::....:.::|..||.:|||..||.....:   :....||:.. ||.|
 Frog    47 FYYTVFTLSLLGNGLILFLLLKYEKIKTVTNLFILNLVISDLLFTIT---LPFWAFYHSNEWVFG 108

  Fly   127 PLWCDIYAGCG--SLFGCVSIWSMCMIAFDRYNVIVKGINGTPMTIKTSIMKILFIWMMAV-FWT 188
            ...|.:.:...  ..|.|:..  :.::..|||..:|..::.      ....|::::::.:: .| 
 Frog   109 NGMCKVVSSVFFIGFFSCILF--LTVMTMDRYLAVVHAVSA------ARTRKLIYVYVASIAIW- 164

  Fly   189 VMPLIGWSAYVP------------------EGNLTACSIDYMTRMWNPRSYLITYSLFVYYTPLF 235
               :|.:.:.||                  |...:|..||    .|....|....::|..: ||.
 Frog   165 ---VISFVSTVPKFVLYGTRKHDSAGILCEETGFSADKID----TWRRLGYYQQLTMFFLF-PLI 221

  Fly   236 LICYSYWFIIAAVAAHEKAMREQAKKMNVKSLRSSEDCDKSAEGKLAKVALTTISLWFMAWTPYL 300
            :|.|.|..|:             .|..|.|  ..::|       |..|:....:..:|:.||||.
 Frog   222 VILYCYTLIV-------------VKLFNTK--MHNKD-------KAVKLISVIVLAFFICWTPYN 264

  Fly   301 VICYFGLFKIDGLTPLTTIWGATF------AKTSAVYNPIVYGISHPKYR 344
            |:.:..|...|   |........|      |......||..|.....|:|
 Frog   265 VVIFLRLSPGD---PCNDYLNNAFYICRNIAYFHCCINPFFYTFVGTKFR 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh2NP_524398.1 7tmA_photoreceptors_insect 59..347 CDD:320207 65/310 (21%)
TM helix 1 59..85 CDD:320207 5/21 (24%)
TM helix 2 92..118 CDD:320207 7/25 (28%)
TM helix 3 130..160 CDD:320207 6/31 (19%)
TM helix 4 171..191 CDD:320207 2/20 (10%)
TM helix 5 218..247 CDD:320207 8/28 (29%)
TM helix 6 276..306 CDD:320207 8/29 (28%)
TM helix 7 315..340 CDD:320207 6/30 (20%)
ccr3NP_001107334.1 7tmA_XCR1 42..314 CDD:341337 65/310 (21%)
TM helix 1 42..69 CDD:341337 5/21 (24%)
TM helix 2 76..101 CDD:341337 8/27 (30%)
TM helix 3 112..142 CDD:341337 6/31 (19%)
TM helix 4 154..176 CDD:341337 4/25 (16%)
TM helix 5 204..233 CDD:341337 8/42 (19%)
TM helix 6 240..270 CDD:341337 9/36 (25%)
TM helix 7 282..307 CDD:341337 5/24 (21%)

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