DRSC/TRiP Functional Genomics Resources

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Protein Alignment Octalpha2R and ser-4

DIOPT Version :9

Sequence 1:NP_001262715.1 Gene:Octalpha2R / 42258 FlyBaseID:FBgn0038653 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_497452.1 Gene:ser-4 / 175322 WormBaseID:WBGene00004779 Length:445 Species:Caenorhabditis elegans


Alignment Length:617 Identity:160/617 - (25%)
Similarity:239/617 - (38%) Gaps:215/617 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 PNHTEVHWDGRYPSGYTLTHIVIASIIVTILMIIIVVGNMLVIIAIATEKSLK-NIQNWFIASLA 158
            |.|.|:..|...|    |...||.:.::.:|::...:||:.||:||..|:.|: ..|.:.|.|||
 Worm    35 PAHAEIFSDIERP----LVQTVILASVLLVLILSCFIGNLFVILAIIMERDLRGRPQYYLIFSLA 95

  Fly   159 VADFFLGLIIMPFSLANELMGYWIFGSWWCDIHSAMDVLLCTASIMNLCLISLDRYWSITKAVDY 223
            |||..:|:|:.|......:.|.|..|...||...::|||:|||||::|..|:||||||||. :.|
 Worm    96 VADLLVGMIVTPLGAWFTVTGTWNLGVVVCDFWISVDVLVCTASILHLVAIALDRYWSITD-ICY 159

  Fly   224 LKSRTPARAAVMITAVWIMSALICIPPLLGWKVKMPEGPLPK------CELSEDIGYVLYSALGS 282
            :::|||.|..:|:..:|..|.||.:.|..|||   .||...:      |.:|:.|.|.::|...:
 Worm   160 VQNRTPKRITLMLAVIWFTSLLISLAPFAGWK---DEGFSDRVLKSHVCLISQQISYQVFSTATA 221

  Fly   283 FYIPSCIMVFVYIRIYFAAKARARRGIKKHPRKTNNEQVTSFTTAKKGTIPMPSSSGVSALQLHQ 347
            ||||...::.||.:|..|||.|.:|                                        
 Worm   222 FYIPLIAIICVYWKIMRAAKKRFKR---------------------------------------- 246

  Fly   348 QRQIATIETPPNSASLPMQIPTVTMDLASDISTSEAGELEAVAAQTVLAYANPNGAGTNSVTVVS 412
            :|...|:..||..|                     ..|.:|:                       
 Worm   247 ERDRRTVIRPPPDA---------------------IDEKKAM----------------------- 267

  Fly   413 SGNGGPGASGVPPSSPKETLQVSTIATGRVGLNVPVPPSMGSNSSINVLNNNNGTVAMDGGATAA 477
                      :|..|.|                .|:||::    .|:.:..|.||    ||.|  
 Worm   268 ----------MPKKSKK----------------CPLPPAV----VISDIQANGGT----GGKT-- 296

  Fly   478 GGGNGSAVATPGGLQQTGGNELRVSPIAGRCRALSVGVDTDMVSEFDPSSSDSGVVSRCAVVKPL 542
                               |.::                                          
 Worm   297 -------------------NSIK------------------------------------------ 300

  Fly   543 KFRLCQPIFGRKSSNQQRRNEAKAAAKNQQSSGVASKNQQQQQQQQQQQVVKSELEPAIPKTPKP 607
                          |..|.||:.::|..::.: :...|........|:..:..|...:.|...|.
 Worm   301 --------------NPPRHNESSSSASEEERT-MTQTNHAPGDVTTQETKIDEENGRSKPGIVKR 350

  Fly   608 RDPEKEKRRIARKKEKRATLILGLIMGSFIACWLPFFFLYILVPACSSHCNIPESAFAVAFWLGY 672
            |...||...:  |:|::|...|.:|.|:|:|||.|||.:.|..|.|.  |.|......|..||||
 Worm   351 RRRTKESNEM--KRERKAWRTLAIITGTFVACWTPFFLVSIYRPICG--CQISPVLEQVTLWLGY 411

  Fly   673 MNSALNPAIYTIFNKDFRRAFRRILFKXCLAY 704
            :||||||.|||:|::|||.||:||:.:.||.:
 Worm   412 LNSALNPIIYTVFSQDFRAAFKRIIKRMCLIH 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Octalpha2RNP_001262715.1 7tm_1 132..>315 CDD:278431 75/189 (40%)
7tm_4 133..>252 CDD:304433 52/119 (44%)
ser-4NP_497452.1 7tmA_5-HT1A_invertebrates 52..432 CDD:320454 148/583 (25%)
TM helix 1 53..79 CDD:320454 8/25 (32%)
TM helix 2 87..113 CDD:320454 11/25 (44%)
TM helix 3 125..155 CDD:320454 18/29 (62%)
TM helix 4 166..188 CDD:320454 7/21 (33%)
TM helix 5 210..239 CDD:320454 10/28 (36%)
TM helix 6 361..391 CDD:320454 14/29 (48%)
TM helix 7 400..425 CDD:320454 14/24 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3253
SonicParanoid 1 1.000 - - X366
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.940

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