DRSC/TRiP Functional Genomics Resources

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Protein Alignment Octalpha2R and htr1b

DIOPT Version :9

Sequence 1:NP_001262715.1 Gene:Octalpha2R / 42258 FlyBaseID:FBgn0038653 Length:740 Species:Drosophila melanogaster
Sequence 2:XP_002936251.2 Gene:htr1b / 100495915 XenbaseID:XB-GENE-988006 Length:385 Species:Xenopus tropicalis


Alignment Length:618 Identity:144/618 - (23%)
Similarity:228/618 - (36%) Gaps:262/618 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 NPNHTEVHWDGR--------YPSGYTLTHI-VIASIIVTILMIIIVVGNMLVIIAIATEKSLKNI 149
            |.:.|...:|||        |.....|:.. :|.::|:.::.:..::.|..||..:...:.|...
 Frog    15 NVSQTNYSFDGRSCITSLDSYGQEDVLSFSKIILTVILALITLATLLSNAFVITTVYQTRKLHTP 79

  Fly   150 QNWFIASLAVADFFLGLIIMPFSLANELMGYWIFGSWWCDIHSAMDVLLCTASIMNLCLISLDRY 214
            .|:.|||||..|..:.::::|.::...:.|.|..|...||:..:.|:..|||||::||:|:||||
 Frog    80 ANYLIASLAFTDLLVSILVLPIAIVYTVTGKWTLGQIICDMWLSSDITCCTASILHLCVIALDRY 144

  Fly   215 WSITKAVDYLKSRTPARAAVMITAVWIMSALICIPPLLGWKVKMPEGPLPKCELSED-IGYVLYS 278
            |:||.||:|.|.|||.||.|||..||:.|..|.:|||. |:....| .:..|.::.| |.|.:||
 Frog   145 WAITDAVEYTKKRTPKRAVVMIALVWVFSISISMPPLF-WRQSKAE-EIAVCAVNTDHILYTVYS 207

  Fly   279 ALGSFYIPSCIMVFVYIRIYFAAKARARRGIKKHPRKTNNEQVTSFTTAKKGTIPMPSSSGVSAL 343
            .:|:||||:.:::.:|.|||..|::|.   :|:.|:          ||.|:.|            
 Frog   208 TVGAFYIPTLLLIALYGRIYVEARSRI---LKQSPK----------TTGKRLT------------ 247

  Fly   344 QLHQQRQIATIETPPNSASLPMQIPTVTMDLASDISTSEAGELEAVAAQTVLAYANPNGAGTNSV 408
            :.|      .|...|.|:|:                                       :.|||.
 Frog   248 KAH------LITDSPGSSSV---------------------------------------SSTNSR 267

  Fly   409 TVVSSGNGGPGASGVPPSSPKETLQVSTIATGRVGLNVPVPPSMGSNSSINVLNNNNGTVAMDGG 473
            |                                  |.:|                          
 Frog   268 T----------------------------------LEMP-------------------------- 272

  Fly   474 ATAAGGGNGSAVATPGGLQQTGGNELRVSPIAGRCRALSVGVDTDMVSEFDPSSSDSGVVSRCAV 538
                                                                  ||:|       
 Frog   273 ------------------------------------------------------SDAG------- 276

  Fly   539 VKPLKFRLCQPIFGRKSSNQQRRNEAKAAAKNQQSSGVASKNQQQQQQQQQQQVVKSELEPAIPK 603
                     .|::         .|:.|.                                     
 Frog   277 ---------SPVY---------LNQVKV------------------------------------- 286

  Fly   604 TPKPRDPEKEKRRIARKKEKRATLILGLIMGSFIACWLPFFFLYILVPACSSHCNIPESAFAVAF 668
              |..|...||::|...:|::||..||:|:|::|.||||||.:.:::|.|...|....:.|....
 Frog   287 --KVSDALLEKKKIMAARERKATKTLGVILGAYIVCWLPFFIISLVMPICKDACWFHPAIFDFFN 349

  Fly   669 WLGYMNSALNPAIYTIFNKDFRRAFRRIL--FK 699
            ||||:||.:||.|||:.|:||::||.:::  ||
 Frog   350 WLGYLNSLINPIIYTMSNEDFKQAFHKLINRFK 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Octalpha2RNP_001262715.1 7tm_1 132..>315 CDD:278431 73/183 (40%)
7tm_4 133..>252 CDD:304433 51/118 (43%)
htr1bXP_002936251.2 7tmA_5-HT1B_1D 42..374 CDD:320455 133/581 (23%)
TM helix 1 47..73 CDD:320455 5/25 (20%)
TM helix 2 80..106 CDD:320455 8/25 (32%)
TM helix 3 118..148 CDD:320455 16/29 (55%)
TM helix 4 160..183 CDD:320455 12/23 (52%)
TM helix 5 200..229 CDD:320455 13/28 (46%)
TM helix 6 301..331 CDD:320455 14/29 (48%)
TM helix 7 342..367 CDD:320455 12/24 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3253
SonicParanoid 1 1.000 - - X366
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.940

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