DRSC/TRiP Functional Genomics Resources

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Protein Alignment Octalpha2R and LOC100493940

DIOPT Version :9

Sequence 1:NP_001262715.1 Gene:Octalpha2R / 42258 FlyBaseID:FBgn0038653 Length:740 Species:Drosophila melanogaster
Sequence 2:XP_004912925.1 Gene:LOC100493940 / 100493940 -ID:- Length:394 Species:Xenopus tropicalis


Alignment Length:620 Identity:168/620 - (27%)
Similarity:243/620 - (39%) Gaps:244/620 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 FYNQSSASGATSGNLTNPNHTEVHWDGRYPSGYTLTHIVIASIIVTILMIIIVVGNMLVIIAIAT 142
            |||.|..:.....|:         |.      ||.....:..|.|..:::..|:||:||::||.|
 Frog    11 FYNGSEETDQPQLNV---------WP------YTALECTLIIIAVVSIILSTVLGNILVVLAIFT 60

  Fly   143 EKSLKNIQNWFIASLAVADFFLGLIIMPFSLANELMGYWIFGSWWCDIHSAMDVLLCTASIMNLC 207
            .::|:..||.|:.|||.||..:|.:|:|||||.|:||||.|||.||.::.|:|:|.||:||::||
 Frog    61 SRALRAPQNLFLVSLASADILVGALIIPFSLAREVMGYWHFGSVWCSMYLALDILFCTSSIVHLC 125

  Fly   208 LISLDRYWSITKAVDYLKSRTPARAAVMITAVWIMSALICIPPLLGWKVKMPEGPLPKCELSEDI 272
            .||:|||||:||||.|...|||.|....|..:|::||:|..||||..|.|..|     |.|::|.
 Frog   126 AISIDRYWSVTKAVKYNLKRTPKRIKRSIAIIWVVSAIISFPPLLKSKHKEWE-----CLLNDDT 185

  Fly   273 GYVLYSALGSFYIPSCIMVFVYIRIYFAAKARARRGIKKHPRKTNNEQVTSFTTAKKGTIPMPSS 337
            .|||:|...||::|..||:.:|.|||..||.|                                 
 Frog   186 WYVLFSCTVSFFVPCLIMILLYCRIYRVAKHR--------------------------------- 217

  Fly   338 SGVSALQLHQQRQIATIETPPNSASLPMQIPTVTMDLASDISTSEAGELEAVAAQTVLAYANPNG 402
              ||:|:                            :..||.:::.||                  
 Frog   218 --VSSLR----------------------------NGVSDCNSAAAG------------------ 234

  Fly   403 AGTNSVTVVSSGNGGPGASGVPPSSPKETLQVSTIATGRVGLNVPVPPSMGSNSSINVLNNNNGT 467
                                                              |:..:.:.:.||:  
 Frog   235 --------------------------------------------------GTCETHHTIQNNH-- 247

  Fly   468 VAMDGGATAAGGGNGSAVATPGGLQQTGGNELRVSPIAGRCRALSVGVDTDMVSEFDPSSSDSGV 532
                                                               ...|.|...|.|.|
 Frog   248 ---------------------------------------------------EAEELDLEESTSSV 261

  Fly   533 VSRCAVVKPLKFRLCQPIFGRKSSNQQRRNEAKAAAKNQQSSGVASKNQQQQQQQQQQQVVKSEL 597
            ..                |.:|..::.:...:.|.||.      .|.:..:.||.:.|.:..|::
 Frog   262 HK----------------FPKKHHHKTKDKPSSAKAKR------LSWSSNRGQQHRDQSICISQM 304

  Fly   598 EPAIPKTPKPRDPEKEKRRIARKKEKRATLILGLIMGSFIACWLPFFFLYILVPACSSHCNIPES 662
                              |:.:.:|||.|.:|.:::|.|:.||.||||.|.|...|...|.|.::
 Frog   305 ------------------RLTQLREKRLTFVLAVVIGGFVICWFPFFFTYSLESVCRKRCGISDA 351

  Fly   663 AFAVAFWLGYMNSALNPAIYTIFNKDFRRAFRRIL 697
            .|...||:||.||:|||.|||:||:|||:||||||
 Frog   352 LFNFFFWIGYCNSSLNPIIYTVFNRDFRKAFRRIL 386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Octalpha2RNP_001262715.1 7tm_1 132..>315 CDD:278431 89/182 (49%)
7tm_4 133..>252 CDD:304433 64/118 (54%)
LOC100493940XP_004912925.1 7tmA_alpha-2D_AR 34..382 CDD:320447 154/576 (27%)
TM helix 1 35..61 CDD:320447 9/25 (36%)
TM helix 2 68..94 CDD:320447 15/25 (60%)
TM helix 3 106..136 CDD:320447 17/29 (59%)
TM helix 4 148..171 CDD:320447 9/22 (41%)
TM helix 5 184..213 CDD:320447 14/28 (50%)
TM helix 6 309..339 CDD:320447 14/29 (48%)
TM helix 7 350..375 CDD:320447 13/24 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 297 1.000 Domainoid score I1441
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 333 1.000 Inparanoid score I2375
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D323202at33208
OrthoFinder 1 1.000 - - FOG0001303
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.060

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