DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7720 and cho-1

DIOPT Version :9

Sequence 1:NP_001163649.1 Gene:CG7720 / 42257 FlyBaseID:FBgn0038652 Length:681 Species:Drosophila melanogaster
Sequence 2:NP_502539.1 Gene:cho-1 / 178274 WormBaseID:WBGene00000501 Length:576 Species:Caenorhabditis elegans


Alignment Length:660 Identity:137/660 - (20%)
Similarity:240/660 - (36%) Gaps:210/660 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 VLFIALTVLGPLWKRIFGKKKERSKADYVFATGGVSIVAVMISIAR-GTL-GVRSVLG-YPSELY 77
            |.|..|.::..:|.   |:|.:.||.  :.:..|.:...||::... ||| |:.::.. :....|
 Worm    11 VFFYVLILVVGIWA---GRKSKSSKE--LESEAGAATEEVMLAGRNIGTLVGIFTMTATWVGGAY 70

  Fly    78 YRGSAMWEIIY--GMMSAYPIVCFMFVPVYFNLGITSVYQ---YIDL--RFKSRTVRCLASATYI 135
            ..|:|  |.:|  |::.....|.:....|...|......:   ||.:  .|:.:..:.:....|:
 Worm    71 INGTA--EALYNGGLLGCQAPVGYAISLVMGGLLFAKKMREEGYITMLDPFQHKYGQRIGGLMYV 133

  Fly   136 VRQICNLGITVYTPSV------ALSTVIGIPYWASITGMAVICIFFTIMGGLKAAINADVIQTVT 194
            .   ..||.|.:|.::      .||.::||...||:|..|.|.:|:|..||..|....||:|...
 Worm   134 P---ALLGETFWTAAILSALGATLSVILGIDMNASVTLSACIAVFYTFTGGYYAVAYTDVVQLFC 195

  Fly   195 ILVVTVAVCIQGTISTGGVKKVYQLNRDNGRLNFWNFTGDMTVRVDTTSAWLGQL--FMSLS-QI 256
            |. |.:.||:...:...|.|   .::|:         .||          |:|::  |...| .|
 Worm   196 IF-VGLWVCVPAAMVHDGAK---DISRN---------AGD----------WIGEIGGFKETSLWI 237

  Fly   257 GCQ----------QNFMQRYVSLKSLKQVRRVMLTNVPLVFFFFSISWISG-----MVIYSTYI- 305
            .|.          |.:.||.:|.|:....:              ::|:::|     |.|....| 
 Worm   238 DCMLLLVFGGIPWQVYFQRVLSSKTAHGAQ--------------TLSFVAGVGCILMAIPPALIG 288

  Fly   306 ----NCD-------PYAEGYIKK---PDE---ILPFFVEDQLGFLPGFVGI--FMATLFNGALCM 351
                |.|       |:..|...:   ||:   ::|...:........|:|:  ..|.:.:.|...
 Worm   289 AIARNTDWRMTDYSPWNNGTKVESIPPDKRNMVVPLVFQYLTPRWVAFIGLGAVSAAVMSSADSS 353

  Fly   352 MVSNLNSLATVIWEDFISQLPKFKGLSDKQQLRILKSITVVCGLIIMGVAFGVGLLAGVIESSL- 415
            ::|..:..|..||:..|      :..:.::::.|:..|.::|          ||::|.::..:: 
 Worm   354 VLSAASMFAHNIWKLTI------RPHASEKEVIIVMRIAIIC----------VGIMATIMALTIQ 402

  Fly   416 -----------LVFSATSGPLLGCFILAMMVPIANWKGTSAGMVTACAFVLWIIGGGMTVTKDNP 469
                       ||: ....|.|.|.:   .:|.:|..|:.||.  |...||.:|||       .|
 Worm   403 SIYGLWYLCADLVY-VILFPQLLCVV---YMPRSNTYGSLAGY--AVGLVLRLIGG-------EP 454

  Fly   470 LL--------PTSTDGCTNDTFAQSI--------------GKPIVEQGQM--PW---------LL 501
            |:        |..|||.....|..:.              .:.:.:.|::  .|         .:
 Worm   455 LVSLPAFFHYPMYTDGVQYFPFRTTAMLSSMATIYIVSIQSEKLFKSGRLSPEWDVMGCVVNIPI 519

  Fly   502 SHTPIDGFNQSFVPTQPTI---APERSGLETFYSISFMYYSLIGTALTVIIGTVISLLTQHPDD- 562
            .|.|:.. :.||..:..|:   ||.                  ||...|           ||:. 
 Worm   520 DHVPLPS-DVSFAVSSETLNMKAPN------------------GTPAPV-----------HPNQQ 554

  Fly   563 -AYDGKLLHP 571
             :.:..||||
 Worm   555 PSDENTLLHP 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7720NP_001163649.1 SLC5sbd_NIS-SMVT 10..556 CDD:271383 131/641 (20%)
cho-1NP_502539.1 SLC5sbd_CHT 7..492 CDD:271368 119/556 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0591
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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