DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ChAT and crata

DIOPT Version :9

Sequence 1:NP_477004.5 Gene:ChAT / 42249 FlyBaseID:FBgn0000303 Length:721 Species:Drosophila melanogaster
Sequence 2:NP_001027489.1 Gene:crata / 613081 XenbaseID:XB-GENE-996699 Length:625 Species:Xenopus tropicalis


Alignment Length:659 Identity:231/659 - (35%)
Similarity:366/659 - (55%) Gaps:62/659 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 SILSIPKKWLSTAESVDEFGFPDTLPKVPVPALDETMADYIRALEPITTPAQLERTKELIRQFSA 128
            |:..:|.::|:..|.         ||.:|||.|.:|:..|:.||:|:.:..:...|:.|:..|..
 Frog    20 SLAKLPGRYLAHQEG---------LPCLPVPPLQQTLDKYLLALKPLVSLEEWSLTRVLVEDFRT 75

  Fly   129 PQGIGARLHQYLLDKREAEDNWAYYYWLNEMYMDIRIPLPINSNPGMVFPPRRFKTVHDVAHFAA 193
             .|:|.||.:.|..:....:||...:||...|::.|:|:.::||||:|.|.:.|:.......|||
 Frog    76 -SGVGERLQKGLERRARKTENWLSEWWLQTAYLEYRMPVVVHSNPGVVLPKQDFEDRQGQLRFAA 139

  Fly   194 RLLDGILSHREMLDSGELPLERAASREKNQPLCMAQYYRLLGSCRRPGVKQDSQFLPSRERLNDE 258
            :|::|:|..:.|:|:..||:|....:    ||||.|||::|.|||.||.|:|:  :.:..:.:..
 Frog   140 KLIEGVLDFKTMVDNETLPVEYLGGK----PLCMNQYYQMLSSCRIPGPKRDT--VANYSQASKP 198

  Fly   259 DRHVVVICRNQMYCVVLQASDRGKLSESEIASQILYVLSDAPCLPAKPVPVGLLTAEPRSTWARD 323
            ..|:.|:...|.:.:.:..||...|:..:|.:|:..:...:  |.....|:|:||...|::||:.
 Frog   199 PTHITVVHNFQFFELDVYNSDGTPLTSDQIFTQLEKIWGTS--LQTNKEPIGILTTNHRNSWAKA 261

  Fly   324 REMLQEDERNQRNLELIETAQVVLCLDEPLAGNFNARGFTGATPTVHRAGDRDETNMAHEMIHGG 388
            ...|.:|:.|:.::..|:.:...:|||.|:             |.|  :.|..::.:|.:|:|||
 Frog   262 YNNLIKDKTNKESVRTIQKSIFTVCLDAPI-------------PRV--SDDLYQSQVAAQMLHGG 311

  Fly   389 GSEYNSGNRWFDKTMQLIICTDGTWGLCYEHSCSEGIAVVQLLEKI--YKKIEEHPDEDNGLPQH 451
            ||.:||||||||||:|.|:..||:.||.|||:.:||..:|.|::.:  |.|   .|:.... |..
 Frog   312 GSRWNSGNRWFDKTLQFIVAEDGSCGLVYEHAPAEGPPIVALIDHVVEYTK---RPELIRS-PMM 372

  Fly   452 HLPPPERLEWHVGPQLQLRFAQASKSVDKCIDDLDFYVYRYQSYGKTFIKSCQVSPDVYIQLALQ 516
            .||.|::|.:::.|:::....:|.::::..:.|||..|:.:..:||.|.||.::|||.:||||||
 Frog   373 PLPMPKKLRFNITPEIKNDIEKAKQNLNIMVHDLDVKVFVFSVFGKNFPKSEKLSPDAFIQLALQ 437

  Fly   517 LAHYKLYGRLVATYESASTRRFLHGRVDCIRAASTEALEWAKAMCQGEGANVPLESDREDEEESR 581
            |::|::|.::.|||||||.|.|..||.|.||:||.::..:.:||            |...::...
 Frog   438 LSYYRMYKQVCATYESASLRMFRLGRTDTIRSASIDSENFVQAM------------DDPSKQNQE 490

  Fly   582 KVKFSIYSKDHLRELFRCAVARQTEVMVKNILGNGIDIPLLGLREASIEVTGEMHELFKDESYII 646
            ||           :|.|.||..........|.||.||..||||:..:||....|.|||.|.||.:
 Frog   491 KV-----------DLLRKAVQAHRAYTDMAINGNAIDRHLLGLKLQAIEDLVSMPELFMDTSYAV 544

  Fly   647 SQCFLLSTSQVACSTDSFMGYGPVTPRGYGCSYNPHPEQIVFCVSAFYSCEDTSASRYAKSLQDS 711
            :..|.||||||...||..|.:|||.|.|||..|||..:.|.|.||||.||.:|:|:|.|..|:.:
 Frog   545 AMHFNLSTSQVPAKTDCVMCFGPVVPDGYGVCYNPMEDHINFAVSAFNSCAETNAARLAHYLERA 609

  Fly   712 LDIMRDLLQ 720
            |..|:.|:|
 Frog   610 LCDMQQLVQ 618

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ChATNP_477004.5 Carn_acyltransf 88..716 CDD:279140 224/629 (36%)
crataNP_001027489.1 Carn_acyltransf 35..614 CDD:376382 224/629 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D167256at33208
OrthoFinder 1 1.000 - - FOG0001049
OrthoInspector 1 1.000 - - otm48143
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2058
SonicParanoid 1 1.000 - - X630
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.040

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