DRSC/TRiP Functional Genomics Resources

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Protein Alignment ChAT and cpt-1

DIOPT Version :9

Sequence 1:NP_477004.5 Gene:ChAT / 42249 FlyBaseID:FBgn0000303 Length:721 Species:Drosophila melanogaster
Sequence 2:NP_496721.2 Gene:cpt-1 / 174912 WormBaseID:WBGene00012907 Length:779 Species:Caenorhabditis elegans


Alignment Length:718 Identity:188/718 - (26%)
Similarity:316/718 - (44%) Gaps:138/718 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 GWK-----DSILSIPKKWLSTAESVDEFG-----FPDTLPKVPVPALDETMADYIRALEPITTPA 114
            ||.     ..:....|.||.....:.:.|     |...||::|:|.||:|:..::.:::||.:..
 Worm   134 GWMYESPGKPVSKATKLWLGVLHIISKAGPMLHSFQGALPRLPLPNLDDTVRKHLLSMKPILSDE 198

  Fly   115 QLERTKELIRQFSAPQGIGARLHQYLLDKREAEDNWAYYYWLNEMYMDIRIPLPINSNPGMVFPP 179
            :.:..:.|..:|.  :|:|.||.:||..|.....|:...:|...:||..|.|:.||||      .
 Worm   199 EFQELEFLSERFR--KGVGRRLQRYLTLKSWFSSNYVTDWWEEFVYMRQRSPIMINSN------Y 255

  Fly   180 RRFKTVHD-----VAHFAARLLDGILSHREMLDSGELPLERAASREKNQPLCMAQYYRLLGSCRR 239
            ..|.|:::     .|..||.|....|..|.|:|..|:.....:.|.| .|.|..||.||..:||.
 Worm   256 YGFDTLNEHPTQNQASRAANLTYTSLQFRRMVDRQEVSPFSISPRTK-VPFCTMQYERLFNTCRV 319

  Fly   240 PGVKQDSQFLPSRERLN--DEDRHVVVICRNQMYCVVLQASDRGKLSESEIASQILYVLSDAPCL 302
            ||.:.|        ||.  |:.:|:.|.||...:.:::....| .|...|:..|...:|:.....
 Worm   320 PGEEVD--------RLLHWDDAKHIAVYCRGVWFKLIVHNGKR-LLEACELQVQYDAILAHTHEP 375

  Fly   303 PAKPVPVGLLTAEPRSTWARDREMLQEDERNQRNLELIETAQVVLCLDEPLAGNFNARGFTGATP 367
            ....:.:..|||..|:.||:.|........|:.:|..||.|..|:.||:                
 Worm   376 SEGEMHLASLTAGERADWAKTRRAHFRSGVNKTSLNDIERAAFVVILDD---------------- 424

  Fly   368 TVHRAGDRDET-----------NMAHEMIHGGGSEYNSGNRWFDKTMQLIICTDGTWGLCYEHSC 421
                    :||           :.||.::||     .:.:|||||:..|||..:|..|:..|||.
 Worm   425 --------EETHYDPQDPSKLDHWAHNLLHG-----KAHDRWFDKSFNLIISKNGHVGINTEHSW 476

  Fly   422 SEGIAVVQLLE-KIYKKIEEHPDEDNGL----PQHHLPPPERLEWHV-GPQL-QLRFAQASKSVD 479
            .:...:....| .:.:.|.....::||.    |:..| .||||:|.: .|.| |:|  ::.:..:
 Worm   477 GDAAVMAHFTEWSLLQDIVFIGYDENGRCKGEPKEKL-TPERLKWEIPAPALDQIR--KSMEVAN 538

  Fly   480 KCIDDLDFYVYRYQSYGKTFIKSCQVSPDVYIQLALQLAHYKLYGRLVATYESASTRRFLHGRVD 544
            ..|.|::..:..:..|||.|.|..:||||.::|:.||..::|...:...|||::.||.|..||.:
 Worm   539 ALIADVEMSLLVWTDYGKGFAKKLKVSPDAFLQMTLQYTYFKNQNKFSLTYEASMTRLFREGRTE 603

  Fly   545 CIRAASTEALEWAKAMCQGEGANVPLESDREDEEESRKVKFSIYSKDHLRELFRCAVARQTEVMV 609
            .:|:.:.::.::.::|         |::.:..::..:.::.:.   |..:||:|.|:.       
 Worm   604 TVRSCTVQSSDFVRSM---------LDASKTPQDRLQLLRKAC---DKHQELYRDAMC------- 649

  Fly   610 KNILGNGIDIPLLGLREASIEVTGEMHELFKDES----YIISQCFLLSTSQV---ACSTD----- 662
                |.|:|..|..|.        .:....::||    .|....:||||||.   .|..|     
 Worm   650 ----GQGVDRHLFALY--------VIKRYLEEESPFFDNIFPPTYLLSTSQTPMNQCEADAKGLS 702

  Fly   663 ---------SFMGYGPVTPRGYGCSYNPHPEQ-IVFCVSAFYSCEDTSASRYAKSLQDSLDIMRD 717
                     :..|:|||..||||.||....|. :.|.:|:..|.::||:..:.:.|:.||:.|:.
 Worm   703 NEVRLRLITAGGGFGPVADRGYGVSYIVAGEDTLSFHISSKRSADNTSSREFREELKRSLNDMKK 767

  Fly   718 LLQ 720
            |.:
 Worm   768 LAE 770

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ChATNP_477004.5 Carn_acyltransf 88..716 CDD:279140 179/674 (27%)
cpt-1NP_496721.2 CPT_N 1..46 CDD:293093
Carn_acyltransf 172..766 CDD:279140 179/674 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D559299at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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