DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ChAT and Crat

DIOPT Version :9

Sequence 1:NP_477004.5 Gene:ChAT / 42249 FlyBaseID:FBgn0000303 Length:721 Species:Drosophila melanogaster
Sequence 2:XP_006497708.1 Gene:Crat / 12908 MGIID:109501 Length:631 Species:Mus musculus


Alignment Length:645 Identity:239/645 - (37%)
Similarity:362/645 - (56%) Gaps:61/645 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 DTLPKVPVPALDETMADYIRALEPITTPAQLERTKELIRQFSAPQGIGARLHQYLLDKREAEDNW 150
            |.||::|||.|.:::..|::||:||.:..:...||:|:.:|....|:|.||.:.|..:.:..:||
Mouse    33 DALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKMENW 97

  Fly   151 AYYYWLNEMYMDIRIPLPINSNPGMVFPPRRFKTVHDVAHFAARLLDGILSHREMLDSGELPLER 215
            ...:||...|:..|.|:.|.|:||::.|.:.|..:.....|||:|::|:|..:.|:|:..||:|.
Mouse    98 LSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAAKLIEGVLDFKSMIDNETLPVEF 162

  Fly   216 AASREKNQPLCMAQYYRLLGSCRRPGVKQDS--QFLPSRERLNDEDRHVVVICRNQMYCVVLQAS 278
            ..    .|||||.|||::|.|||.||.||||  .||.|:.    ...|:.|:...|.:.:.:..|
Mouse   163 LG----GQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKR----PPTHITVVHNYQFFELDVYHS 219

  Fly   279 DRGKLSESEIASQILYVLSDAPCLPAKPVPVGLLTAEPRSTWARDREMLQEDERNQRNLELIETA 343
            |...|:..:|..|:..:.:.:  |.:...|||:||:..|:|||:....|.:|:.|:.::..|:.:
Mouse   220 DGTPLTSDQIFVQLEKIWNSS--LQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQKS 282

  Fly   344 QVVLCLDEPLAGNFNARGFTGATPTVHRAGDRDETNMAHEMIHGGGSEYNSGNRWFDKTMQLIIC 408
            ...:|||:.:             |.|  :.|....::|.:|:|||||::||||||||||:|.|:.
Mouse   283 IFTVCLDKQV-------------PRV--SDDVYRNHVAGQMLHGGGSKFNSGNRWFDKTLQFIVA 332

  Fly   409 TDGTWGLCYEHSCSEGIAVVQLLEKI--YKKIEEHPDEDNGLPQHHLPPPERLEWHVGPQLQLRF 471
            .||:.|:.|||:.:||..:|.|::.:  |.|..|....    |...||.|::|.:::.|:::...
Mouse   333 EDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVRS----PMVPLPMPKKLRFNITPEIKNDI 393

  Fly   472 AQASKSVDKCIDDLDFYVYRYQSYGKTFIKSCQVSPDVYIQLALQLAHYKLYGRLVATYESASTR 536
            .:|.:::...|.|||..:..:..:||.|.||.::|||.:||:|||||:|::||:..|||||||.|
Mouse   394 EKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLR 458

  Fly   537 RFLHGRVDCIRAASTEALEWAKAMCQGEGANVPLESDREDEEESRKVKFSIYSKDHLRELFRCAV 601
            .|..||.|.||:||.::|.:.|.|  |: :.||         |.:||           ||.|.||
Mouse   459 MFHLGRTDTIRSASIDSLAFVKGM--GD-STVP---------EQQKV-----------ELLRKAV 500

  Fly   602 ARQTEVM-----VKNILGNGIDIPLLGLREASIEVTGEMHELFKDESYIISQCFLLSTSQVACST 661
            .......     .:.|.|...|..||||:..:||....|.::|.|.||.|:..|.||||||...|
Mouse   501 QAHRAYTDRISHPQAIRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKT 565

  Fly   662 DSFMGYGPVTPRGYGCSYNPHPEQIVFCVSAFYSCEDTSASRYAKSLQDSLDIMRDLLQN 721
            |..|.:|||.|.|||..|||....|.|.|||:.||.:|:|:|.|..|:.:|..||.||||
Mouse   566 DCVMFFGPVVPDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQN 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ChATNP_477004.5 Carn_acyltransf 88..716 CDD:279140 232/636 (36%)
CratXP_006497708.1 Carn_acyltransf 35..620 CDD:376382 232/636 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3717
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001049
OrthoInspector 1 1.000 - - otm43021
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2058
SonicParanoid 1 1.000 - - X630
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.840

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