DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ChAT and chat

DIOPT Version :9

Sequence 1:NP_477004.5 Gene:ChAT / 42249 FlyBaseID:FBgn0000303 Length:721 Species:Drosophila melanogaster
Sequence 2:XP_002933959.1 Gene:chat / 100485221 XenbaseID:XB-GENE-984174 Length:636 Species:Xenopus tropicalis


Alignment Length:645 Identity:252/645 - (39%)
Similarity:376/645 - (58%) Gaps:68/645 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 LPKVPVPALDETMADYIRALEPITTPAQLERTKELIRQFSAPQGIGARLHQYLLDKREAEDNWAY 152
            |||:|||.|.:||..|::.::.:.|..|.:::|.::..|..|.|.|..|.:.||::||..:||.:
 Frog    23 LPKLPVPPLKQTMDTYLKCMKHLVTEEQYQKSKAVVDAFMMPGGEGETLQEKLLERREKMENWIH 87

  Fly   153 YYWLNEMYMDIRIPLPINSNPGMVFPPRRFKTVHDVAHFAARLLDGILSHREMLDSGELPLERAA 217
            .|||::||::.|:|||:||:|.::|....|:..:|...|||.|:.|:|.::.||||..||::.|.
 Frog    88 LYWLDDMYLNNRLPLPVNSSPAVIFARHNFRDTNDQLRFAANLISGVLDYKTMLDSQALPVDFAR 152

  Fly   218 SREKNQPLCMAQYYRLLGSCRRPG------VKQDSQFLPSRERLNDEDRHVVVICRNQMYCVVLQ 276
            .:...||:||.|||.|..|.|.||      |.|:|..:|       |..|::|.|.||.:.:.:.
 Frog   153 GQLSGQPMCMKQYYGLFSSYRLPGTIKDTLVAQESTIMP-------EPEHIIVACNNQFFVLDVV 210

  Fly   277 ASDRGKLSESEIASQILYV----LSDAPCLPAKPVPVGLLTAEPRSTWARDREMLQEDERNQRNL 337
            .:.| :|||.::.:|:..:    .::...||    |:||||::.|:.||..||.|.:|..|:.:|
 Frog   211 INFR-RLSEGDLFTQLCKIDRMAKNEEEMLP----PIGLLTSDGRAEWAHARETLMKDSTNRDSL 270

  Fly   338 ELIETAQVVLCLDEPLAGNFNARGFTGATPTVHRAGDRDETNMAHEMIHGGGSEYNSGNRWFDKT 402
            ::||....::|||.|.....|                  :||.|.:::||||...|.||||:||.
 Frog   271 DMIERCMCIVCLDAPTKMELN------------------DTNRALQLLHGGGIGRNGGNRWYDKP 317

  Fly   403 MQLIICTDGTWGLCYEHSCSEGIAVVQLLEKIYKKIEEHPDE----DNGLPQHHLPPPERLEWHV 463
            ||.::.:||..|...|||..:||.:||..|.:.|.::..|.:    |:   ...||.|.||.|..
 Frog   318 MQFVVGSDGVCGTICEHSPFDGIVLVQCTEHLLKYMKNSPKKLVRADS---VSELPAPRRLRWKC 379

  Fly   464 GPQLQLRFAQASKSVDKCIDDLDFYVYRYQSYGKTFIKSCQVSPDVYIQLALQLAHYKLYGRLVA 528
            .|::|...|.::..:.:.:::|||.||::::|||.|||..::|||.:||:|||||.|:.:.:||.
 Frog   380 SPEIQGHLASSANKLQRIVNNLDFIVYKFKNYGKEFIKKQRMSPDAFIQVALQLAFYRCHRKLVP 444

  Fly   529 TYESASTRRFLHGRVDCIRAASTEALEWAKAMCQGEGANVPLESDREDEEESRKVKFSIYSKDHL 593
            ||||||.|||..||||.||:::.|||.:..||..||.....:|.                     
 Frog   445 TYESASIRRFQMGRVDNIRSSTAEALAFVNAMVDGETTVTNIEK--------------------- 488

  Fly   594 RELFRCAVARQTEVMVKNILGNGIDIPLLGLREASIEVTGEMHELFKDESYIISQCFLLSTSQVA 658
            .|..|.|:..|||..::.|.|..||..||.|||.:.|...|:.|||:||.|:.|..|:||||||.
 Frog   489 MEYLRAAIKSQTEYTIQAITGMAIDNHLLALRELAQEHFKELPELFRDEMYLTSNRFILSTSQVP 553

  Fly   659 CSTDSFMGYGPVTPRGYGCSYNPHPEQIVFCVSAFYSCEDTSASRYAKSLQDSLDIMRDL 718
            .:.:.|..||||.|.||||.|||.||.|:||||:|:.|:|||:|::||::::||..|.||
 Frog   554 TTMEMFCCYGPVVPNGYGCCYNPQPEHILFCVSSFHDCKDTSSSKFAKAVEESLLAMGDL 613

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ChATNP_477004.5 Carn_acyltransf 88..716 CDD:279140 249/641 (39%)
chatXP_002933959.1 Carn_acyltransf 23..610 CDD:376382 249/640 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 453 1.000 Domainoid score I498
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H40693
Inparanoid 1 1.050 454 1.000 Inparanoid score I1551
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D167256at33208
OrthoFinder 1 1.000 - - FOG0001049
OrthoInspector 1 1.000 - - otm48143
Panther 1 1.100 - - LDO PTHR22589
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X630
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.160

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