DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ChT and RGD1563815

DIOPT Version :9

Sequence 1:NP_650743.1 Gene:ChT / 42245 FlyBaseID:FBgn0038641 Length:614 Species:Drosophila melanogaster
Sequence 2:XP_006256382.1 Gene:RGD1563815 / 365549 RGDID:1563815 Length:695 Species:Rattus norvegicus


Alignment Length:564 Identity:120/564 - (21%)
Similarity:225/564 - (39%) Gaps:133/564 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 IVLFY-LLILVVGIWAGRKKQSGNDSEEEVMLAGRSIGLFVGIFTMTATWVGGGYINGTAEAIYT 73
            ::.|| ||:|.:|:||......|  :.::..|||:::..::...::.::.||.|:..|.|.....
  Rat    29 VMTFYLLLVLCIGLWALLSHSRG--TIKDFFLAGQNLAWWLMGLSIYSSTVGSGHFMGLAGIGAA 91

  Fly    74 SGLVWCQAPFGYALSLVFGGIFFANPMRKQGYITMLDPLQDSFGERMGGLLFLPALCGEVFWAAG 138
            ||:......:.....|...|..|.....|.|.:|:.:.|:..||.....|.|     ..||....
  Rat    92 SGIAVGAFEWNTVFMLFMLGWIFVPIYSKAGVVTLPEYLKKRFGSVRIQLFF-----SFVFLIVY 151

  Fly   139 ILAAL------GAT-LSVIIDMDHRTSVILSSCIAIFYTLFGGLYSVAYTDVIQLFCIFIGLWMC 196
            ||:.:      ||. |.::.|:|...:::....|...||:.|||.:|||.:.:|...:.:|..:.
  Rat   152 ILSRISMEIGFGAMFLKMVWDIDIYQTMLTVLTITGVYTITGGLATVAYVETLQAGIMVLGSALL 216

  Fly   197 IPFAWSNEHVGSLSDL-------------EVDWIGHVE---PKKHWLYIDYGLLLVFGGIPW--- 242
            :.:|:  ..||...:|             :.:|....|   |::...::...  .|.|.:||   
  Rat   217 MGYAF--YEVGGYQELVNKYSKAIPSTIQQGNWTAKPECYTPREDAFHVFRS--CVSGDVPWPGL 277

  Fly   243 ---------------QVYFQRVLSSKT----AGRAQLLSYVAAAGCILMAIPPVLIGAIAKATPW 288
                           ||..||.|:.|:    .|...|..|:......||.:|    |.|::.   
  Rat   278 VLGATTVSLFYGCADQVSVQRFLAGKSRLHMEGGCLLCGYLKLLPMFLMVMP----GMISRV--- 335

  Fly   289 NETDYKGPYPLTVDETSMILP-------------MVLQY------LTPDFVSFFGLGAVSAAVMS 334
                      |..|:.:.::|             ..|.|      :.|..:..|.|..|.|::||
  Rat   336 ----------LFPDQVACVVPSECEKFCGRGTGCSALAYPVLVLGVMPSGLQGFMLSTVCASLMS 390

  Fly   335 SADSSVLSAASMFARNVYKLIFRQKASEMEIIWVMRVAIIVVGILATIMALTIPSIYGLWSMCSD 399
            |..|...|::::|..|:|..| |..|:|.|::...|..:|:      ::|:||     :|     
  Rat   391 SLTSIFNSSSALFTLNIYTWI-RPTATEKELMIAGRFFVII------LLAVTI-----VW----- 438

  Fly   400 LVYVILFPQ--LLMVVHFKKHCNTYGSLSAYIVALAIRLSGGE---------AILGLAPLIKYPG 453
            :..:.:.|.  |...:...|.|.|....:.:::|:..:....:         :.:|:..|:....
  Rat   439 IPIIEMAPSETLFEYMQILKSCLTPSVTAVFLLAVFCKRVNEQGAFWGLILGSTIGVFRLLAEFF 503

  Fly   454 YDEET--KEQMFP----------FRTMAMLLSLVTLISVSWWTK 485
            |...|  :::..|          |....:|:|::.::::|..|:
  Rat   504 YGPPTCGEDRQCPIFICGLHYLYFGFCLLLVSILIILAISLATE 547

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ChTNP_650743.1 SLC5sbd_CHT 7..481 CDD:271368 118/558 (21%)
RGD1563815XP_006256382.1 SLC5-6-like_sbd 26..695 CDD:294310 120/564 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340305
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0591
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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