DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ChT and Slc5a10

DIOPT Version :9

Sequence 1:NP_650743.1 Gene:ChT / 42245 FlyBaseID:FBgn0038641 Length:614 Species:Drosophila melanogaster
Sequence 2:NP_001100477.1 Gene:Slc5a10 / 303205 RGDID:1305232 Length:596 Species:Rattus norvegicus


Alignment Length:619 Identity:136/619 - (21%)
Similarity:237/619 - (38%) Gaps:169/619 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 INIAGVVSIVLFYLLILVVGIW----AGRKKQSGNDSEEEVMLAGRSI----------------G 46
            ::.:.::.|.|::.|.:.||:|    |.:...||      ..||||.:                |
  Rat    16 LSTSDIIVISLYFALNVAVGVWTACRANKNTVSG------YFLAGRDMAWWPIGASLFASSEGSG 74

  Fly    47 LFVGIFTMTATWVGGGYINGTAEAIYTSGLVWCQAPFGYALSLVFGGIFFANPMRKQGYITMLDP 111
            ||:|:       .|.|...|.|.|    |..|.......||:.||..|:.::.:     :|:.:.
  Rat    75 LFIGL-------AGSGAAGGLAVA----GFEWNATYVLLALAWVFVPIYVSSEI-----VTLPEY 123

  Fly   112 LQDSF-GERMGGLLFLPALCGEVFWAAGILAALGAT-LSVIIDMDHRTSVILSSCIAIFYTLFGG 174
            :|..| |:|:...|.:.:|...||....|....||. :.:.:..:...|.||:..|...||:.||
  Rat   124 IQKRFGGQRIRMYLSVLSLLLSVFTKISIDLYAGALFVHICLGWNFYLSTILTLAITALYTIAGG 188

  Fly   175 LYSVAYTDVIQLFCIFIGLWMCIPFAWSNEHVGSLSDLEVDWIGHVEPKK--------------- 224
            |.:|.|||.:|...:.:|..:....|::  .:|....||..: ....|.:               
  Rat   189 LATVIYTDALQTAIMVVGAVILAVKAFN--QIGGYEQLEAAY-AQATPSRTIPNTTCHLPRADAM 250

  Fly   225 H-----------WLYIDYGLLLVFGGIPW-----QVYFQRVLSSKTAGRAQ----LLSYVAAAGC 269
            |           |..:.:||.::   ..|     ||..||.||::....|:    |.||:.....
  Rat   251 HMFRDPSTGDLPWTGMTFGLTIM---ATWYWCTDQVIVQRSLSARNLNHAKAGSILASYLKMLPM 312

  Fly   270 ILMAIPPVLIGAIAKATPWNETDYKGP-----------------YPLTVDETSMILPMVLQYLTP 317
            .||.:|    |.|::....::.....|                 ||..|.|   ::|:.|:.|. 
  Rat   313 GLMIMP----GMISRVLFPDDVGCVVPSECLRACGAEIGCSNIAYPKLVME---LMPIGLRGLM- 369

  Fly   318 DFVSFFGLGAVSAAVMSSADSSVLSAASMFARNVYKLIFRQKASEMEIIWVMRVAIIVVGILATI 382
                   :..:.||::||..|...|::::|..::::. ||..|.|.|::.|.|:.|:|   |..:
  Rat   370 -------IAVMMAALLSSLTSIFNSSSTLFTMDIWRQ-FRPGAGERELLLVGRLVIVV---LVGV 423

  Fly   383 MALTIPSIYG---------LWSMCSDLVYVILFPQLLMVVHFKKHCNTYGSLSAYIVALAIRLSG 438
            ....||.:.|         :.|:.|.|...:....||.:  |.:..|..|:....:..|.:    
  Rat   424 SVAWIPVLQGSNSGQLFIYMQSVTSSLAPPVTAIFLLGI--FWRRANEQGAFWGLMAGLLV---- 482

  Fly   439 GEAILGLAPLIKYP-GYDEETKEQMFP--------------FRTMAMLL--SLVT-------LIS 479
              ..|.|.....|| .:..:...:.||              |.|.|::.  ||::       :.:
  Rat   483 --GALRLVLEFLYPEPHCGQIDTRPFPLGSIHYLHFAIALFFLTCAVMAAGSLLSPPPQQRQIEN 545

  Fly   480 VSWWT-------KMMFESGKLPPSYDYFRCVVNI 506
            ::|||       :.....|:.|....::..|.|:
  Rat   546 LTWWTLDPNWSLRTKTGDGQTPQKRAFWTRVCNV 579

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ChTNP_650743.1 SLC5sbd_CHT 7..481 CDD:271368 129/580 (22%)
Slc5a10NP_001100477.1 SLC5-6-like_sbd 17..596 CDD:294310 136/618 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340307
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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