DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ChT and Slc5a4b

DIOPT Version :9

Sequence 1:NP_650743.1 Gene:ChT / 42245 FlyBaseID:FBgn0038641 Length:614 Species:Drosophila melanogaster
Sequence 2:XP_008771154.1 Gene:Slc5a4b / 294342 RGDID:1309867 Length:660 Species:Rattus norvegicus


Alignment Length:705 Identity:157/705 - (22%)
Similarity:259/705 - (36%) Gaps:213/705 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 NIAGVVSIVLFYLLILVVGIWAGRKKQSGNDSEEEVMLAGRSIGLFVGIFTMTATWVGGGYINGT 67
            |.|.:..||:::|::|.||:|:..:...|...  ...||||.:..:....::.|:.:|..:..|.
  Rat    25 NAADISVIVIYFLVVLAVGLWSMVRSNRGTIG--GFFLAGRDVSWWPMGASLFASNIGSNHFVGL 87

  Fly    68 AEAIYTSGLVWCQAPFGYALSLVFGGIFFANPMRKQGYITMLDPLQDSFGER-------MGGLLF 125
            |.....||:......:...|.::..|..|.....|.|..||.:.|:..||.:       :..|..
  Rat    88 AGTGAASGIAIAAVEWNALLMVLVLGWVFVPIYIKAGVTTMPEYLRKRFGGKRLQIYLSVLSLFI 152

  Fly   126 LPAL-------CGEVFWAAGILAALGATLSVIIDMDHRTSVILSSCIAIFYTLFGGLYSVAYTDV 183
            :.|:       .|.:|    |..|||..|.:        :|.:...|..|||:.|||.||.|||.
  Rat   153 MVAIQTSSTIFSGAIF----IQLALGLNLYL--------AVFILLAITAFYTVAGGLASVIYTDS 205

  Fly   184 IQLFCIFIGLWMCIPFAWSNEHVGSLSDLEVDWIGHV------------------EPKKHWLYID 230
            :|.|.:.:|..:.:.||::  .||........::..:                  :|....::.|
  Rat   206 VQTFIMLVGSLILMGFAFA--EVGGYESFTEKYMNAIPSVVEGDNLTISPKCYTPQPDSFHIFRD 268

  Fly   231 YGLLLVFGGIPW------------------QVYFQRVLSSKTAGRAQLLSYVAAAGCI----LMA 273
                .:.|.|||                  ||..||.|..|.      :|:|.|| ||    |..
  Rat   269 ----PINGDIPWPGLIFGMTILAIWYWCADQVMVQRCLCGKN------MSHVKAA-CIMCGYLKL 322

  Fly   274 IPPVLI---GAIAKATPWNETDYKGPYPLTVDETSMILP--------------------MVLQYL 315
            :|..|:   |.|::.             |..|:.:.::|                    :||: |
  Rat   323 LPMFLMVMPGMISRI-------------LYTDKVACVVPSECVKQCGTAVGCTNYAYPTLVLE-L 373

  Fly   316 TPDFVSFFGLGAVSAAVMSSADSSVLSAASMFARNVYKLIFRQKASEMEIIWVMRVAIIVVGILA 380
            .||.:....|..:.|::|||..|...||:::|..::|..| |:||||.|::...||..||   |.
  Rat   374 MPDGLRGLMLSVMLASLMSSLTSIFNSASTLFTMDLYTKI-RKKASERELMVAGRVFGIV---LI 434

  Fly   381 TIMALTIPSIYGLWSMCSDLV-YVILFPQ--------LLMVVHFKKHCNTYGSLSAYIVALAIRL 436
            .|..|.:|.|..  |....|. |:..|..        :.::..|.|..|..|:....:|.|    
  Rat   435 VISILWVPLIQA--SQNGQLFHYISSFSSYIGPPVGAVFLLAIFCKRVNEQGAFWGLMVGL---- 493

  Fly   437 SGGEAILGLAPLIKYPGYDEETKEQMFP--------------FRTMAMLLSLVTLISVSWWTKMM 487
                 ::||..:|....|.  |...:.|              |..:...:|::.::.||:.|:.:
  Rat   494 -----VIGLIRMITEFIYG--TGSCLEPSNCPRIICGVHYMYFAIILFFVSILVILGVSFLTEPI 551

  Fly   488 FESGKLPPSYDYFRCVVNIPEDVQRVGDPSESGEQLSVMAGPLARSYGAATMAGKDERNGRINPA 552
                   |....:|...::..:.:         |::.:.|              :.|....:..|
  Rat   552 -------PDVHLYRLCWSLWNNTE---------ERIDLDA--------------EQETREEVGGA 586

  Fly   553 LESDDDLPVAEARR-------------------INQETAQAQVKKMLDNATGVKP 588
            ||.||    ||..|                   :.:|...|..:|..|  |..||
  Rat   587 LEEDD----AEQSRGCLRRACSLFCGLQSTGPKLTEEEEAALRQKFSD--TSEKP 635

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ChTNP_650743.1 SLC5sbd_CHT 7..481 CDD:271368 132/573 (23%)
Slc5a4bXP_008771154.1 SLC5-6-like_sbd 27..660 CDD:294310 156/703 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340310
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0591
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

Return to query results.
Submit another query.