back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG7706 and Snip1

DIOPT Version :10

Sequence 1:	NP_650742.2	Gene:	CG7706 / 42244	FlyBaseID:	FBgn0038640	Length:	726	Species:	Drosophila melanogaster
Sequence 2:	NP_001014091.1	Gene:	Snip1 / 313588	RGDID:	1359268	Length:	389	Species:	Rattus norvegicus

Alignment Length:	226	Identity:	61/226 - (26%)
Similarity:	92/226 - (40%)	Gaps:	72/226 - (31%)

- Green bases have known domain annotations that are detailed below.

  Fly    10 LPKP------KVIITEKP---------------RSEVPAEPPPPPLKIPKTPKSSPAAVCPYKVP 53
            :|:|      :|.:.|||               |..|.....||..:|||              .
  Rat   198 IPRPAGNKNKEVPVKEKPSFELSGALLEDTNTFRGVVIKYSEPPEARIPK--------------K 248

  Fly    54 KWSAPPAENQIYSFEVLKSGQIIDTVHQLQQQAVWTFGRLPE-NDVPAAHPTISRFHVVLQYKPK 117
            :|...|.:|.    |||       .|..:.:|:.:..||... .|:|..||:.|:.|.|.||:
  Rat   249 RWRLYPFKND----EVL-------PVMYIHRQSAYLLGRHRRIADIPIDHPSCSKQHAVFQYR-- 300

  Fly   118 APPKPETAKEDDEMEEEDEEPKNDQPEGWYIYDMGSTHGTFLNKQRVPPKVYIRMRVGHMLKLGG 182
               ..|..:.|..:      .:..:|   ||.|:||.:|||||.:|:.|:.|..::...:||.|.
  Rat   301 ---LVEYTRADGTV------GRRVKP---YIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKFGF 353

  Fly   183 STRVYIL-----------QGPGEDEEPESEL 202
            |:|.|:|           :...||||.|.|:
  Rat   354 SSREYVLLHESSDTSELDRKEDEDEEEEEEM 384

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.