DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cpsf73 and SNM1

DIOPT Version :10

Sequence 1:NP_650738.1 Gene:Cpsf73 / 42240 FlyBaseID:FBgn0261065 Length:684 Species:Drosophila melanogaster
Sequence 2:NP_850635.1 Gene:SNM1 / 822280 AraportID:AT3G26680 Length:484 Species:Arabidopsis thaliana


Alignment Length:382 Identity:76/382 - (19%)
Similarity:143/382 - (37%) Gaps:100/382 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 FISHFHLDH-CGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEADLEAS 137
            |::|||.|| .|     |.|....|..:.:..|..:.|..||       ::...:...|.|:|  
plant   173 FLTHFHADHYIG-----LTKAWSHGPIYCSSLTSRLLRLSLS-------VNPSSIHPLELDVE-- 223

  Fly   138 MEKIETINFHEERDVMGVRFCAYIAGHVLGAAMFMIEIA-GIKILYTGDF--SRQEDRHLMAAEV 199
                .|||        |::.....|.|..|||:....:. |...|:||||  |:|...|.:... 
plant   224 ----YTIN--------GIKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFRASKQMQTHPLLFN- 275

  Fly   200 PPMKPDVLITESTYGTHIHE--KREDRENRFTSLVQKIVQQGGRCLIPV--FALGRAQELLLILD 260
              .:..||..::||....::  .:||..:....:.:..:::..:.||.|  :::|:....|.|  
plant   276 --QRVHVLYLDTTYCNPRYKFPSKEDVLSYVVRITKDFLRKQPKTLIVVGSYSIGKECVYLAI-- 336

  Fly   261 EFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMN---------DRIRRQIAVNNPFVFRHI-- 314
                            |.:|..|..|      ||..         |.|.:.::.:......|:  
plant   337 ----------------AKALGVKIFA------NASRRRILQSFGWDDISKNLSTDGKATCLHVLP 379

  Fly   315 -SNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKAVLSEPE 378
             |:|| ::..::             ...:.||.:         |.::|......|.::.:....:
plant   380 MSSLK-VERLDE-------------HLKIYREQY---------GAVLAFRPTGWTYSEKIGEHLD 421

  Fly   379 EITTLSGQKLPLNMSVDYISFSAHTDYQQTSEFIRLLKPTHVVLVHGEQNEMSRLKL 435
            .|...|..|:    ::..:.:|.|:.:.:..||::.|:|..::......|..:|.|:
plant   422 LIKPTSRGKI----TIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNNGNAGTREKM 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cpsf73NP_650738.1 CPSF3-like_MBL-fold 18..211 CDD:293850 37/140 (26%)
YSH1 19..427 CDD:440849 73/372 (20%)
CPSF73-100_C 486..680 CDD:463330
SNM1NP_850635.1 SNM1A-1C-like_MBL-fold 142..290 CDD:293831 39/145 (27%)
DRMBL 360..467 CDD:429512 20/133 (15%)
Blue background indicates that the domain is not in the aligned region.

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