DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cpsf73 and CPSF73-II

DIOPT Version :9

Sequence 1:NP_650738.1 Gene:Cpsf73 / 42240 FlyBaseID:FBgn0261065 Length:684 Species:Drosophila melanogaster
Sequence 2:NP_178282.2 Gene:CPSF73-II / 814702 AraportID:AT2G01730 Length:613 Species:Arabidopsis thaliana


Alignment Length:611 Identity:191/611 - (31%)
Similarity:306/611 - (50%) Gaps:54/611 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEA-----DEIDLLFISHFHLDH 82
            ||||||:|:||:::...|||||.|||:|.|....:..|...||..     :.|..:.|:|||:||
plant     8 LGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITHFHMDH 72

  Fly    83 CGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKIS-NISTEQMLYTEADLEASMEKI----- 141
            .||||:|.....:.|..:|::.|||:...||.||.::. :...|:.|:|...:...|:|:     
plant    73 VGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFTTTHIANCMKKVIAIDL 137

  Fly   142 -ETINFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLMAAEVPPMKPD 205
             :||...|:..:.     ||.|||||||.|...::....|:||||::...||||.||::..::.|
plant   138 KQTIQVDEDLQIR-----AYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDRLQLD 197

  Fly   206 VLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALGRAQELLLILDEFWSQNPDLH 270
            :||:||||.|.|...:..||..|...|.|.|..||:.|||.|||||||||.::||::|.:..  .
plant   198 LLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQELCMLLDDYWERMN--I 260

  Fly   271 EIPIYYASSLAKKCMAVYQTYINAMNDRIRRQIAVNNPFVFRHISNLKGIDH--FEDIGPCVIMA 333
            ::|||::|.|..:....|:..|:..:..::.:...:|||.|:   |:|..|.  ....||||:.|
plant   261 KVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTHNPFDFK---NVKDFDRSLIHAPGPCVLFA 322

  Fly   334 SPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLA-KAVLSEPEEITTLSGQKLPLNMSVDYI 397
            :|||:.:|.|.|:|:.|...|.|.|.:.||.|.||:. |.:..:|..:...:|.|:.:...|..:
plant   323 TPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGHKLMAGKPTTVDLYNGTKVDVRCKVHQV 387

  Fly   398 SFSAHTDYQQTSEFIRLLKPTHVVLVHGEQNEMSRLKLALQREYEADASTDIKFYNPRNTHAVDL 462
            :||.|||.:...:..:.|.|.:|||||||:..|..||..:..|      .||..:.|.|...|..
plant   388 AFSPHTDAKGIMDLTKFLSPKNVVLVHGEKPSMMILKEKITSE------LDIPCFVPANGETVSF 446

  Fly   463 ----YFRGEKTAKVMGSLAAKNSEVGSK----------LSGVLV-KRDFKYHLLAPSDLGKYTDM 512
                |.:...:...:.|.:..|.:..:.          ..|||| ::..|..::...::.:....
plant   447 ASTTYIKANASDMFLKSCSNPNFKFSNSTQLRVTDHRTADGVLVIEKSKKAKIVHQDEISEVLHE 511

  Fly   513 SMSVVTQRQSIP---WGSSLSTLELLLDRIGAGCVEVLEAERKLRVFGCIELTVEQKIIVMEWQA 574
            ...||:.....|   .|.|......|:.::.|..::.:...:......|:::...:..:.::.:.
plant   512 KNHVVSLAHCCPVKVKGESEDDDVDLIKQLSAKILKTVSGAQIHESENCLQVASFKGSLCLKDKC 576

  Fly   575 TH-VNDVYADAVLAC----IMQSELG 595
            .| .:...::||..|    |...|||
plant   577 MHRSSSSSSEAVFLCCNWSIADLELG 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cpsf73NP_650738.1 YSH1 18..456 CDD:224157 165/447 (37%)
CPSF3-like_MBL-fold 18..211 CDD:293850 75/199 (38%)
Beta-Casp 252..373 CDD:214983 43/123 (35%)
RMMBL 386..426 CDD:284853 14/39 (36%)
CPSF73-100_C 483..683 CDD:215023 21/132 (16%)
CPSF73-IINP_178282.2 YSH1 3..446 CDD:224157 167/453 (37%)
INTS11-like_MBL-fold 5..203 CDD:293849 75/199 (38%)
Beta-Casp 244..362 CDD:214983 42/122 (34%)
RMMBL 378..416 CDD:284853 13/37 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1236
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53735
OrthoDB 1 1.010 - - D218195at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.830

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