DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cpsf73 and dclre1a

DIOPT Version :10

Sequence 1:NP_650738.1 Gene:Cpsf73 / 42240 FlyBaseID:FBgn0261065 Length:684 Species:Drosophila melanogaster
Sequence 2:NP_001018385.5 Gene:dclre1a / 324964 ZFINID:ZDB-GENE-050522-124 Length:926 Species:Danio rerio


Alignment Length:406 Identity:78/406 - (19%)
Similarity:151/406 - (37%) Gaps:122/406 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 KKIMLDCGIHPGLS-GMDALPYVDLIEADEIDLLFISHFHLDHCG------ALPWFLMKTSFKGR 98
            |||       ||.. .:||..| .::|.  :...|::|||.||.|      |:|.:..|.:    
Zfish   574 KKI-------PGTGFAVDAFQY-GVVEG--VTAYFLTHFHSDHYGGLKKDSAVPIYCNKVT---- 624

  Fly    99 CFMTHATKAIYRWMLSDYIKISNISTEQMLYTEADLEASMEKIETINFHEERDVMGVRFCAYIAG 163
                                 ||:       .::.|:...:.|..:..:.|..|.||:.....|.
Zfish   625 ---------------------SNL-------VKSKLKVDEQYIHVLPMNTECIVQGVKVTLLDAN 661

  Fly   164 HVLGAAMFMIEIA-GIKILYTGDFSRQEDRHLMAAEVPPMKPDVLITESTYGTHIHEKREDRE-- 225
            |..||||.:..:. |..:|:|||| |.:.......|:..::...|..::||.:..:.....:|  
Zfish   662 HCPGAAMLLFVLPDGQTVLHTGDF-RADPSMERYPELQGLRIQTLYLDTTYCSPEYTFPTQQEVV 725

  Fly   226 --------NRFTSLVQKIVQQGGRCLIPVFALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAK 282
                    .|.|...:.:|..|      .:::|: :::.|.:.|..|                :|
Zfish   726 TFAVNTAFERVTLNPRTLVVCG------TYSVGK-EKVFLAVSEVLS----------------SK 767

  Fly   283 KCMA--VYQTYINAMNDRIRRQIAVNNPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRE 345
            .|::  .|.|.....::.|.::|..|......|:..:..| :|::            :|:.|.: 
Zfish   768 VCLSKDKYNTMCCLESEDIGQRITTNWQSAQVHVLPMMQI-NFKN------------LQTHLKK- 818

  Fly   346 LFESWCTDPKNGVIIA----GYCVEGTL-AKAVLSEPEEITTLSGQKLPLNMSVDYISFSAHTDY 405
                  ...|...::|    |:....|: ...:|.:.:.           |:|:..|.:|.|:.:
Zfish   819 ------FSKKYDQLVAFKPTGWTFNQTVGVDDILPQTQG-----------NISIYGIPYSEHSSF 866

  Fly   406 QQTSEFIRLLKPTHVV 421
            .:...|::.|:|..::
Zfish   867 LELKRFVQWLRPKKII 882

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cpsf73NP_650738.1 CPSF3-like_MBL-fold 18..211 CDD:293850 42/177 (24%)
YSH1 19..427 CDD:440849 78/406 (19%)
CPSF73-100_C 486..680 CDD:463330
dclre1aNP_001018385.5 None
Blue background indicates that the domain is not in the aligned region.

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