Protein Alignment CstF64 and PUB1

DIOPT Version :9

• Sequence 1: NP_477453.1
• Gene: CstF64 / 42239
• FlyBaseID: FBgn0027841
• Length: 419
• Species: Drosophila melanogaster
• Sequence 2: NP_014382.1
• Gene: PUB1 / 855716
• SGDID: S000004961
• Length: 453
• Species: Saccharomyces cerevisiae
• Alignment Length: 404
• Identity: 84/404 - (20%)
• Similarity: 127/404 - (31%)
• Gaps: 150/404 - (37%)

  Fly     7 EQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETAL 71
            :||..|.:. ::|||::.....:|.|:..|.:....||..:::|.::|..:|:||..:..|:.|.
Yeast   154 QQSSSDDTF-NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQ 217

  Fly    72 SAMRNLNGYEIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEPEDAPELITKTVASLPP 136
            :||.::.|.::.||.||::.|....:...     ...|....||.
Yeast   218 NAMDSMQGQDLNGRPLRINWAAKRDNNNN-----NNYQQRRNYGN-------------------- 257

  Fly   137 EQMYELMKQMKLCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQALGMLFKANQ------ 195
                           :|....||....|                 :....:||....|.
Yeast   258 ---------------NNRGGFRQYNSNN-----------------NNNMNMGMNMNMNMNMNNSR 290

  Fly   196 -MPPVLGGNPHQGPGNHTMMGQQQVPQQQVQIPQQQQQAPQPPMPVPGPGFPANVHPNDID--LR 257
             |||...|.|         :|...:|.|..  |||.|..          |.|..|:|..:|  :|
Yeast   291 GMPPSSMGMP---------IGAMPLPSQGQ--PQQSQTI----------GLPPQVNPQAVDHIIR 334

  Fly   258 MVPG-------GPMP-------MDPRMMGRGMDQDLRASLPNPVPPPLMDPRARAQMPPQ----- 303
            ..|.       |.:|       :.|.....|...|.:                  ..|.:
Yeast   335 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFK------------------HYPEKGCCFI 381

  Fly   304 -----QQQGVPQAPPAPYPSDPRQRPMDPRLRAGPG-------PQQQAPPQGIP------QAPPP 350
                 :|..|.....|.:|...|      .||.|.|       |||| ...|.|      |.|..
Yeast   382 KYDTHEQAAVCIVALANFPFQGR------NLRTGWGKERSNFMPQQQ-QQGGQPLIMNDQQQPVM 439

  Fly   351 TQQQQAAAQQLQSR 364
            ::|||...||.|.:
Yeast   440 SEQQQQQQQQQQQQ 453

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CstF64	NP_477453.1	RRM	<13..>112	CDD:223796	24/98 (24%)
		RRM_CSTF2_CSTF2T	18..92	CDD:241115	22/73 (30%)
		CSTF2_hinge	112..190	CDD:291025	7/77 (9%)
		CSTF_C	377..416	CDD:291002
PUB1	NP_014382.1	RRM1_PUB1	77..150	CDD:410026
		RRM2_PUB1	161..240	CDD:410031	23/79 (29%)
		RRM3_PUB1	341..414	CDD:410033	15/96 (16%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910