DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and IST3

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_012270.1 Gene:IST3 / 854821 SGDID:S000001444 Length:148 Species:Saccharomyces cerevisiae


Alignment Length:143 Identity:40/143 - (27%)
Similarity:71/143 - (49%) Gaps:29/143 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 QSIMDKSMRS------------------VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESG 54
            |.|.||.::|                  :::||:..|.||..:..:|||.|..:.:.|..|..:|
Yeast     5 QQINDKELQSGILSPHQSWHNEYKDNAYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTG 69

  Fly    55 KPKGFGFCEYKDQETALSAMRNLNGYEIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCE 119
            :.:||.:.:|:||.:.:.|:.||||::||||.|::|:......| .:|:          |.|..:
Yeast    70 ESQGFAYLKYEDQRSTILAVDNLNGFKIGGRALKIDHTFYRPKR-SLQK----------YYEAVK 123

  Fly   120 PEDAPELITKTVA 132
            .|...::::|..|
Yeast   124 EELDRDIVSKNNA 136

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 32/101 (32%)
CSTF2_hinge 111..190 CDD:433869 5/22 (23%)
CSTF_C 377..416 CDD:464130
IST3NP_012270.1 RRM_ist3_like 22..109 CDD:409845 28/86 (33%)
Blue background indicates that the domain is not in the aligned region.

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