DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and HRP1

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_014518.1 Gene:HRP1 / 853997 SGDID:S000005483 Length:534 Species:Saccharomyces cerevisiae


Alignment Length:412 Identity:80/412 - (19%)
Similarity:131/412 - (31%) Gaps:147/412 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 QEQSIMDKSMRS--VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQE 68
            :|:|..|.|..|  :|:|.:.::.||:.|:|.|.:.|.|..||::.|..:|:.:||||..::...
Yeast   147 EERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPS 211

  Fly    69 TALSAMRNLNGYEIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEPED----------A 123
            :                   ||..      ::.|.:|.|..::.....|.:.:|          .
Yeast   212 S-------------------VDEV------VKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIG 251

  Fly   124 PELITKTVASLPPEQMYELMKQ------MKLCIVSNPSEARQMLMLNPQLAYAL----------- 171
            |:        :.|::..|...|      .:|.:..:..::|....:....|.|:           
Yeast   252 PD--------VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDF 308

  Fly   172 LQAMVVMRIVDPQQA----------------------LGMLFKANQM--PPVLGG-NPHQGPGNH 211
            ....:.::..:|:..                      .|.....|||  .|::|| ||...|...
Yeast   309 KDRKIEIKRAEPRHMQQKSSNNGGNNGGNNMNRRGGNFGNQGDFNQMYQNPMMGGYNPMMNPQAM 373

  Fly   212 T----------MMGQQQVPQQQVQIPQQQQQAPQPPMPVPGPGFPANVHPNDIDLRMVPGGPMPM 266
            |          ...|:|......|:.|||.|  |..|                   |:||..|| 
Yeast   374 TDYYQKMQEYYQQMQKQTGMDYTQMYQQQMQ--QMAM-------------------MMPGFAMP- 416

  Fly   267 DPRMMGRGMDQDLRASLPNPVPPPLMDPRARAQMPPQQQQGVPQAPPAPYPSDPRQRPMDPRLRA 331
                                       |.|.....|||.....|..|||..||..:......:..
Yeast   417 ---------------------------PNAMTLNQPQQDSNATQGSPAPSDSDNNKSNDVQTIGN 454

  Fly   332 GPGPQQQAPPQGIPQAPP-PTQ 352
            .......:||..:|..|. |:|
Yeast   455 TSNTDSGSPPLNLPNGPKGPSQ 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 22/85 (26%)
CSTF2_hinge 111..190 CDD:433869 12/127 (9%)
CSTF_C 377..416 CDD:464130
HRP1NP_014518.1 PABP-1234 <144..463 CDD:130689 74/397 (19%)
RRM1_Hrp1p 161..236 CDD:409991 22/99 (22%)
RRM2_Hrp1p 244..321 CDD:409767 8/84 (10%)
Blue background indicates that the domain is not in the aligned region.

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