DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CstF64 and NSR1

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_011675.1 Gene:NSR1 / 853064 SGDID:S000003391 Length:414 Species:Saccharomyces cerevisiae


Alignment Length:134 Identity:29/134 - (21%)
Similarity:68/134 - (50%) Gaps:25/134 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ADKAQEQSIMDKSMR--------SVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKG 58
            |::.:::...:|..:        ::|||.:.:...:|.||:.|..:|.|:..:::::|.:.:.:|
Yeast   146 AEEEEDEESSNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRG 210

  Fly    59 FGFCEYKDQETALSAMRNLNGYEIGGRTLRVDNACTEKSRMEMQQLLQGPQVEN----PYGE-PC 118
            :|:.:::::..|..|::.:.|.||.||.:..|.:.::            |...|    .:|: |.
Yeast   211 YGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSK------------PAGNNDRAKKFGDTPS 263

  Fly   119 EPED 122
            ||.|
Yeast   264 EPSD 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 21/91 (23%)
CSTF2_hinge 111..190 CDD:433869 6/17 (35%)
CSTF_C 377..416 CDD:464130
NSR1NP_011675.1 RRM1_gar2 169..244 CDD:409881 20/74 (27%)
RRM2_gar2 269..341 CDD:409882
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.