DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and PTI1

DIOPT Version :9

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_011672.1 Gene:PTI1 / 853060 SGDID:S000003388 Length:425 Species:Saccharomyces cerevisiae


Alignment Length:467 Identity:95/467 - (20%)
Similarity:166/467 - (35%) Gaps:142/467 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 VGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKG--FGFCEYKDQETALSAMRNLNGYEI 82
            :.|:|.|..::.:..:.:..|||:.:|...|..:||..|  |.:...||.:.|...:..:..:.:
Yeast    24 ITNLPPEWNQDIITSVVAGSGPVIDIKAKNDPRTGKLTGVLFDYLTSKDCKRAWEILNRIENFPV 88

  Fly    83 GGRTLRVDN-------ACTEKSRMEMQQLLQGPQ-----VENPY---------GEPCEPED---- 122
            ....:...|       ...:.|:.::.||.:...     :|.|:         ..|..|:.    
Yeast    89 KIEQIIPPNYKDHLRETANKNSQKQVLQLNRDSYPFEAGLELPFEMVTEVPIPRRPPPPQAANNT 153

  Fly   123 -------------------------------APELITKTVASLPPEQMYELMKQMKLCIVSN--- 153
                                           ||:.|::.::.:||.|:.|::..:|  |:||   
Yeast   154 NSVSNNTNIQFPDILSKASKHLPSFQDGSIIAPDKISQNLSKIPPLQLIEIISNLK--ILSNQEN 216

  Fly   154 --PSEARQMLMLNPQLAYALLQAMVVMRIVDPQQALGML-FKANQMPPVLGGNPHQGPGNHTMMG 215
              .|:....|..|..:..::.||::.|..:|......:| .:..:.|.:|..|..........:.
Yeast   217 IQKSQLESFLDTNSDITISVTQALLEMGFIDYSVVTKVLKSQVGEAPSLLSSNNTSNSNTPVSVI 281

  Fly   216 QQQVPQQQVQIPQQQQQAPQPPMPVPGPGFPANVHPNDIDLRMVPGGPMPMDPRMMGRGMDQDLR 280
            :...|   :.:|..:                .:.:||::.|.:..  ||||              
Yeast   282 RNNTP---LHVPSNE----------------VSNNPNNMPLNVAM--PMPM-------------- 311

  Fly   281 ASLPNPVPPPLMDPRARAQMPPQQQQGVPQAPPAPYPSDPRQRPM--DPRLRAGPGPQQQAPPQG 343
             |.|..:|.||            |||....|||.|: ..|.|.|.  .|.|....|..||   |.
Yeast   312 -STPPFIPLPL------------QQQPFGFAPPGPF-MPPAQGPSMGQPVLANQLGQVQQ---QN 359

  Fly   344 IPQAPPPTQQQQA--------AAQQLQSRLGAHGVLPSDASDQEKAALIMQVLQLSDEQIAQLPS 400
            |.....|:...:|        |..||         ||.:..|     :|.|||.|:..||..|||
Yeast   360 ISSTEGPSNANKANDSGTINMAKLQL---------LPENQQD-----MIKQVLTLTPAQIQSLPS 410

  Fly   401 EQRVSIVMLKEQ 412
            :|::.:...:::
Yeast   411 DQQLMVENFRKE 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM <13..>112 CDD:223796 19/105 (18%)
RRM_CSTF2_CSTF2T 18..92 CDD:241115 16/80 (20%)
CSTF2_hinge 112..190 CDD:291025 21/126 (17%)
CSTF_C 377..416 CDD:291002 12/36 (33%)
PTI1NP_011672.1 RRM 21..90 CDD:214636 15/65 (23%)
CSTF2_hinge 185..255 CDD:405077 18/71 (25%)
PABP-1234 <306..413 CDD:130689 44/153 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0724
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45735
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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