DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CstF64 and AT5G10350

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_196597.1 Gene:AT5G10350 / 830899 AraportID:AT5G10350 Length:217 Species:Arabidopsis thaliana


Alignment Length:125 Identity:35/125 - (28%)
Similarity:59/125 - (47%) Gaps:16/125 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 AQEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQET 69
            |.::...:...|||:|||:.|..|.|:::..|...|.|..:.::.|: .|:||||.:.|:.:.|.
plant    78 ANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDK-FGQPKGFAYVEFVEVEA 141

  Fly    70 ALSAMRNLNGYEIGGRTLRVDNACTEKSRME--------------MQQLLQGPQVENPYG 115
            ...|:: ||..|:.||.|:|....|....|:              .::....|...:|||
plant   142 VQEALQ-LNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYG 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 28/83 (34%)
CSTF2_hinge 111..190 CDD:433869 3/5 (60%)
CSTF_C 377..416 CDD:464130
AT5G10350NP_196597.1 PIN_SF <6..70 CDD:475124
RRM_II_PABPs 90..161 CDD:409747 26/72 (36%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.