DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and AT5G04600

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_196080.1 Gene:AT5G04600 / 830337 AraportID:AT5G04600 Length:222 Species:Arabidopsis thaliana


Alignment Length:193 Identity:41/193 - (21%)
Similarity:80/193 - (41%) Gaps:43/193 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
            :::|.||:...|.:::..||:.|.|..:::..::::||.|.|||.:::|.|.|..|...:|.|.:
plant    62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLL 126

  Fly    83 GGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPC--EPEDAPELITKTVASLPPEQMYELMKQ 145
            ....|:|.....|..:..:.:           |..|  :|.|:.::..:   .|..|:..|..::
plant   127 MEHMLKVHVIEPENVKPNLWR-----------GFKCNFKPVDSVQIERR---QLNKERTLEEHRK 177

  Fly   146 MKLCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQALGMLFKANQMPPVLGGNPHQGP 208
            |...||....:.|:.:                       :|.|:.::.    |.|.||....|
plant   178 MLQKIVKKDQKRRKRI-----------------------EAAGIEYEC----PELVGNTQPVP 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 22/75 (29%)
CSTF2_hinge 111..190 CDD:433869 13/80 (16%)
CSTF_C 377..416 CDD:464130
AT5G04600NP_196080.1 RRM_NIFK_like 61..134 CDD:409748 21/71 (30%)
PABP-1234 80..>204 CDD:130689 32/164 (20%)
Blue background indicates that the domain is not in the aligned region.

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