DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and ATRBP45C

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_567764.1 Gene:ATRBP45C / 828808 AraportID:AT4G27000 Length:415 Species:Arabidopsis thaliana


Alignment Length:349 Identity:75/349 - (21%)
Similarity:110/349 - (31%) Gaps:118/349 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 SVFVGNIPYEATEEKLKEIFSEV-GPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGY 80
            :||||::..:.|:..|.|.|..| ..|...|:|.||.:|:.||:||..:.|:...:.||..:||.
plant   174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQ 238

  Fly    81 EIGGRTLRVDNACTEKSRMEMQ----QLLQGPQVENPYGEPCEPEDAPELITKTVASLPPEQMYE 141
            ....|.:|...|..:|. :.||    |..||...|:      :|.:....:.....|:..:.:..
plant   239 YCSSRPMRTGPAANKKP-LTMQPASYQNTQGNSGES------DPTNTTIFVGAVDQSVTEDDLKS 296

  Fly   142 LMKQM-KLCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQALGMLFKANQMPPVLGGNPH 205
            :..|. :|..|..|:..|...:.....|.|             :|||.:|               
plant   297 VFGQFGELVHVKIPAGKRCGFVQYANRACA-------------EQALSVL--------------- 333

  Fly   206 QGPGNHTMMGQQQVPQQQVQIPQQQQQAPQPPMPVPGPGFPANVHPNDIDLRMVPGGPMPMDPRM 270
                |.|.:|.|.:.....:.|..:|..|.......|.|:..                       
plant   334 ----NGTQLGGQSIRLSWGRSPSNKQTQPDQAQYGGGGGYYG----------------------- 371

  Fly   271 MGRGMDQDLRASLPNPVPPPLMDPRARAQMPPQQQQGVPQAPPAPYPSDPRQRPMDPRL----RA 331
                                         .|||..:....|||          |.||..    .|
plant   372 -----------------------------YPPQGYEAYGYAPP----------PQDPNAYYGGYA 397

  Fly   332 GPGPQQQAPPQGIPQAPPPTQQQQ 355
            |.|       .|..|.|...||||
plant   398 GGG-------YGNYQQPGGYQQQQ 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 27/77 (35%)
CSTF2_hinge 111..190 CDD:433869 13/79 (16%)
CSTF_C 377..416 CDD:464130
ATRBP45CNP_567764.1 RRM1_SECp43_like 81..158 CDD:409780
RRM2_SECp43_like 172..251 CDD:409781 26/76 (34%)
RRM_SF 277..348 CDD:473069 16/102 (16%)
Blue background indicates that the domain is not in the aligned region.

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