DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and AT3G46020

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_190188.1 Gene:AT3G46020 / 823745 AraportID:AT3G46020 Length:102 Species:Arabidopsis thaliana


Alignment Length:95 Identity:27/95 - (28%)
Similarity:55/95 - (57%) Gaps:3/95 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
            :||..:....|::.|:::||..|.:...:|:.|.|:.:||||||..:..::.|..|:::|:|..:
plant     9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIV 73

  Fly    83 GGRTLRVDNACTEKSRMEMQQLLQGPQVEN 112
            .||.:.|:.|   |:..|::..:...:.|:
plant    74 DGRLIFVEVA---KNAEEVRAGINSNKAED 100

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 24/75 (32%)
CSTF2_hinge 111..190 CDD:433869 1/2 (50%)
CSTF_C 377..416 CDD:464130
AT3G46020NP_190188.1 RRM 9..88 CDD:440488 25/81 (31%)
Blue background indicates that the domain is not in the aligned region.

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