DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and NUC-L2

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_188491.1 Gene:NUC-L2 / 821392 AraportID:AT3G18610 Length:636 Species:Arabidopsis thaliana


Alignment Length:133 Identity:36/133 - (27%)
Similarity:63/133 - (47%) Gaps:17/133 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 RSVFVGNIPYEATEEKLKEIFSEVGPVLSLKL-VFDRESGKPKGFGFCEYKDQETALSAMRNLNG 79
            :::|.||:.|:.....::..|.|.|.|:.::| .||  .|..||:|..|:...|.|..|: .:||
plant   384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFD--DGSFKGYGHIEFASPEEAQKAL-EMNG 445

  Fly    80 YEIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEPEDAPELITKTVASLPPEQMYELMK 144
            ..:.||.:|:|.| .|:..         |:..|| |...|...:..:..:..:|...|.  |:.|
plant   446 KLLLGRDVRLDLA-NERGT---------PRNSNP-GRKGEGSQSRTIYVRGFSSSLGED--EIKK 497

  Fly   145 QMK 147
            :::
plant   498 ELR 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 26/78 (33%)
CSTF2_hinge 111..190 CDD:433869 8/37 (22%)
CSTF_C 377..416 CDD:464130
NUC-L2NP_188491.1 RRM1_NUCLs 385..461 CDD:409884 26/79 (33%)
RRM2_NUCLs 480..556 CDD:409885 4/23 (17%)
Blue background indicates that the domain is not in the aligned region.

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