DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and AT3G07810

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_850539.1 Gene:AT3G07810 / 819972 AraportID:AT3G07810 Length:495 Species:Arabidopsis thaliana


Alignment Length:120 Identity:32/120 - (26%)
Similarity:54/120 - (45%) Gaps:14/120 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADKAQEQSIMDK-----SMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFG 60
            |.:::...||...     ..|.:|||.:|...||...|..|.:.|....:.:::|..:.:|:|||
plant    88 MVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFG 152

  Fly    61 FCEYKDQETALSAMRNLNGYEIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPYG 115
            |..| |.|.|:..:.....:|:.|:.:.|..|..       ::|..||. .:|.|
plant   153 FITY-DSEEAVEKVLLKTFHELNGKMVEVKRAVP-------KELSPGPS-RSPLG 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 25/88 (28%)
CSTF2_hinge 111..190 CDD:433869 2/5 (40%)
CSTF_C 377..416 CDD:464130
AT3G07810NP_850539.1 RRM_SF 8..78 CDD:473069
RRM2_Hrp1p 109..186 CDD:409767 23/84 (27%)
Blue background indicates that the domain is not in the aligned region.

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