DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and AT2G37510

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001325085.1 Gene:AT2G37510 / 818327 AraportID:AT2G37510 Length:167 Species:Arabidopsis thaliana


Alignment Length:140 Identity:36/140 - (25%)
Similarity:55/140 - (39%) Gaps:38/140 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVG-------------PV------------LSLKLVFDRESGKPK 57
            :||..:....|.|||::.|:..|             |:            ::.:::.||:||:.|
plant    36 LFVSGLSRLTTNEKLQDAFASFGQLVDGNVTLGFLNPIYIEHQINRFCFHVAARVITDRDSGRSK 100

  Fly    58 GFGFCEYKDQETALSAMRNLNGYEIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEPED 122
            ||||..|...|.|..|...:|...:.|..:.||.|...:.|..:||            ||..|..
plant   101 GFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRRPLQQ------------EPLRPSS 153

  Fly   123 APELIT-KTV 131
            .....| ||:
plant   154 ESGFTTNKTI 163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 27/100 (27%)
CSTF2_hinge 111..190 CDD:433869 6/22 (27%)
CSTF_C 377..416 CDD:464130
AT2G37510NP_001325085.1 RRM 35..132 CDD:440488 24/95 (25%)
Blue background indicates that the domain is not in the aligned region.

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