DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and tia1

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_997793.1 Gene:tia1 / 793165 ZFINID:ZDB-GENE-030131-1506 Length:386 Species:Danio rerio


Alignment Length:230 Identity:54/230 - (23%)
Similarity:96/230 - (41%) Gaps:37/230 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
            ||||::..|.|.:.::..|:..|.:...::|.|..:||.||:||..:.::..|.:|::.:.|..:
Zfish    98 VFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL 162

  Fly    83 GGRTLRVDNACTE----KSRMEMQ-QLLQGPQVENPYGEPCEPEDAPELITKTVASLPPEQMYEL 142
            |||.:|.:.|..:    |:..|.. :.|...:|.|        :.:|...|.....:......:|
Zfish   163 GGRQIRTNWATRKPPAPKATYETNTKHLSFDEVVN--------QSSPSNCTVYCGGVTTGLTEQL 219

  Fly   143 MKQMKLCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQALGMLFKANQMPPVLGGNPHQG 207
            |:|     ..:|......:.:.|...|:.      :|....:.|...:...|       |...:|
Zfish   220 MRQ-----TFSPFGQIMEVRVFPDKGYSF------VRFNSHESAAHAIVSVN-------GTSLEG 266

  Fly   208 PGNHTMMGQQQV----PQQQVQIPQQQQQ--APQP 236
            .......|::..    |.||||:|||.:.  |.||
Zfish   267 HIVKCYWGKETTDMVSPMQQVQVPQQSKVGFAAQP 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 24/75 (32%)
CSTF2_hinge 111..190 CDD:433869 11/78 (14%)
CSTF_C 377..416 CDD:464130
tia1NP_997793.1 RRM1_TIA1 9..82 CDD:410027
RRM2_TIA1 94..171 CDD:410030 23/72 (32%)
RRM3_TIA1 204..275 CDD:410032 12/88 (14%)
Blue background indicates that the domain is not in the aligned region.

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