DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and Hnrnpd

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_077380.2 Gene:Hnrnpd / 79256 RGDID:620365 Length:353 Species:Rattus norvegicus


Alignment Length:105 Identity:26/105 - (24%)
Similarity:55/105 - (52%) Gaps:7/105 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
            :|:|.:.::.|::.||:.||:.|.|:...|..|..:|:.:||||..:|:.|:....| :...:::
  Rat    97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM-DQKEHKL 160

  Fly    83 GGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEPED 122
            .|:.:....|...|::..::::..|..      .|..||:
  Rat   161 NGKVIDPKRAKAMKTKEPVKKIFVGGL------SPDTPEE 194

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 21/75 (28%)
CSTF2_hinge 111..190 CDD:433869 3/12 (25%)
CSTF_C 377..416 CDD:464130
HnrnpdNP_077380.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..89
CBFNT <55..76 CDD:311868
RRM1_hnRNPD 97..170 CDD:410150 20/73 (27%)
RRM2_hnRNPD 181..255 CDD:241027 4/20 (20%)
Blue background indicates that the domain is not in the aligned region.

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