DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and Msi2

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:XP_006534494.1 Gene:Msi2 / 76626 MGIID:1923876 Length:378 Species:Mus musculus


Alignment Length:410 Identity:80/410 - (19%)
Similarity:133/410 - (32%) Gaps:125/410 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
            :|:|.:.::.:.:.|::.||:.|.:....::.|..:.:.:||||..:.| ..::..:.....:|:
Mouse    23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD-PASVDKVLGQPHHEL 86

  Fly    83 GGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGE-PCEPEDAPELITKT----VASLPPEQMYEL 142
            ..:|:....|...:::.:.|:  ||...:..:.. ........:::|:|    |..|....:.|.
Mouse    87 DSKTIDPKVAFPRRAQPKSQE--QGGSWKRTWTTVQARAASGDQMVTRTKKIFVGGLSANTVVED 149

  Fly   143 MKQMKLCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQALGMLFKANQMPPVLGGNPHQG 207
            :||                              ...:....:.|:.|..|..        |.|:|
Mouse   150 VKQ------------------------------YFEQFGKVEDAMLMFDKTT--------NRHRG 176

  Fly   208 PGNHTMMGQ-----------QQVPQQQVQIPQQQQQAPQPPMPVPGPGFPANVHPNDIDLRMVPG 261
            .|..|...:           .::..:.|:..:.|   |:..|..||....|.            |
Mouse   177 FGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ---PKEVMFPPGTRGRAR------------G 226

  Fly   262 GPMPMDPRMMGRGMDQDLRASLPNPVPP-----PLMDPRARAQMP---PQQQQGVPQAPPAP--- 315
            .|..||..|:|.||     ...||.|..     |...|....|.|   |......|.|...|   
Mouse   227 LPYTMDAFMLGMGM-----LGYPNFVATYGRGYPGFAPSYGYQFPALLPYLNASFPAAAYGPVAA 286

  Fly   316 -------------YPSDPR-QRPMDPRLRAGPGPQQQAPPQGIPQA----------PPPTQQQ-- 354
                         |.:.|. ..|..|   ||..|   |.|.|.|.|          .|.:|..  
Mouse   287 AAVAAARGSVLNSYSAQPNFGAPASP---AGSNP---ARPGGFPGANSPGPVADLYGPASQDSGV 345

  Fly   355 ----QAAAQQLQSRLGAHGV 370
                .||:.|..|..| ||:
Mouse   346 GNYISAASPQPGSGFG-HGI 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 15/75 (20%)
CSTF2_hinge 111..190 CDD:433869 8/83 (10%)
CSTF_C 377..416 CDD:464130
Msi2XP_006534494.1 RRM_SF 17..104 CDD:473069 15/81 (19%)
PABP-1234 <35..363 CDD:130689 76/395 (19%)
RRM2_MSI 135..208 CDD:240769 14/110 (13%)
Blue background indicates that the domain is not in the aligned region.

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