DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and Trnau1ap

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_082201.2 Gene:Trnau1ap / 71787 MGIID:1919037 Length:287 Species:Mus musculus


Alignment Length:149 Identity:36/149 - (24%)
Similarity:67/149 - (44%) Gaps:29/149 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 SVFVGNIPYEATEEKLKEIFSEVG-PVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGY 80
            |:::|::.....|..:...|:.:| .|:|:|::.:|.:|.|.|:.|.|:.|..||...:..:||.
Mouse     4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK 68

  Fly    81 EIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEPEDAPELITKTVASLPPE----QMYE 141
            .:.|        .|...|.::.....|.|          |:::|| .:..|..|.|:    .:||
Mouse    69 PLPG--------ATPAKRFKLNYATYGKQ----------PDNSPE-YSLFVGDLTPDVDDGMLYE 114

  Fly   142 -LMKQMKLC----IVSNPS 155
             .:|....|    :|.:|:
Mouse   115 FFVKVYPSCRGGKVVLDPT 133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 20/77 (26%)
CSTF2_hinge 111..190 CDD:433869 12/54 (22%)
CSTF_C 377..416 CDD:464130
Trnau1apNP_082201.2 RRM1_SECp43 4..87 CDD:410022 22/90 (24%)
RRM2_SECp43 95..176 CDD:410024 10/40 (25%)
Trnau1ap <206..284 CDD:465438
Blue background indicates that the domain is not in the aligned region.

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