DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and Rbm7

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_659197.2 Gene:Rbm7 / 67010 MGIID:1914260 Length:265 Species:Mus musculus


Alignment Length:273 Identity:66/273 - (24%)
Similarity:107/273 - (39%) Gaps:58/273 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 RSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGY 80
            |::||||:..:.|||.|.|:|.:.|||:.:|:..|:: ||.|.|.|..:|.:.:...||..|||.
Mouse    10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKLKQFAFVNFKHEVSVPYAMNLLNGI 73

  Fly    81 EIGGRTLRVDNACTEKSRMEMQQLLQGPQVENP---YGEPCEPEDAPELITKTVASLPPEQMYEL 142
            ::.||.:::      :.|.......|...|..|   .|.......:|....:||.::.|      
Mouse    74 KLFGRPIKI------QFRSGSSHASQDASVSYPQHHVGNLSPTSTSPNSYERTVGNVSP------ 126

  Fly   143 MKQMKLCIVSNPSEARQMLMLNP---QLAYALLQAMVVMRIVDPQQALGMLFKANQMPPVLGGNP 204
            ..||.....|:|.:.::..::|.   |::||       .:...|.        |:|    ||.:|
Mouse   127 TAQMVQRSFSSPEDYQRQAVMNSVFRQMSYA-------GKFGSPH--------ADQ----LGFSP 172

  Fly   205 HQGPGNHTMMGQQQVPQQQVQIPQQQQQAPQPPMPVPGPGFPANVHPNDIDLRMVPGGPMPMDPR 269
            ...|..||.........:|..:..|:::              .|.||...|..      ...:.|
Mouse   173 SAQPHGHTFNQSSSSQWRQDALSSQRKR--------------QNSHPYLADRH------YSREQR 217

  Fly   270 MMGRGMDQDLRAS 282
            ....|.|...|.|
Mouse   218 YSDHGSDYHYRGS 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 29/77 (38%)
CSTF2_hinge 111..190 CDD:433869 15/84 (18%)
CSTF_C 377..416 CDD:464130
Rbm7NP_659197.2 RRM_RBM7 9..83 CDD:410005 29/79 (37%)
PABP-1234 <12..>175 CDD:130689 51/194 (26%)
ZCCHC8 binding. /evidence=ECO:0000250|UniProtKB:Q9Y580 25..35 3/9 (33%)
ZCCHC8 binding. /evidence=ECO:0000250|UniProtKB:Q9Y580 59..76 5/16 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 91..125 7/33 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 166..224 15/81 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 237..265
Blue background indicates that the domain is not in the aligned region.

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