DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CstF64 and SRSF4

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_005617.2 Gene:SRSF4 / 6429 HGNCID:10786 Length:494 Species:Homo sapiens


Alignment Length:101 Identity:27/101 - (26%)
Similarity:46/101 - (45%) Gaps:21/101 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 MRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNG 79
            |..|::|.:.|:|.|..::..|...|.:|.:.|        ..|:||.|:.|...|..|:..|||
Human     1 MPRVYIGRLSYQARERDVERFFKGYGKILEVDL--------KNGYGFVEFDDLRDADDAVYELNG 57

  Fly    80 YEIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPYG 115
            .::.|..:.|::|             :||:.:..||
Human    58 KDLCGERVIVEHA-------------RGPRRDGSYG 80

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 23/78 (29%)
CSTF2_hinge 111..190 CDD:433869 2/5 (40%)
CSTF_C 377..416 CDD:464130
SRSF4NP_005617.2 RRM1_SRSF4 1..87 CDD:410007 27/101 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 72..95 4/9 (44%)
RRM2_SRSF4_like 104..175 CDD:410012
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 169..494
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.