DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and SRSF3

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_003008.1 Gene:SRSF3 / 6428 HGNCID:10785 Length:164 Species:Homo sapiens


Alignment Length:91 Identity:28/91 - (30%)
Similarity:45/91 - (49%) Gaps:10/91 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
            |:|||:.....:.:|:..|...||:.|:.:     :..|.||.|.|::|...|..|:|.|:|..:
Human    12 VYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFEDPRDAADAVRELDGRTL 71

  Fly    83 GGRTLRVDNACTEKSRMEMQQLLQGP 108
            .|..:||     |.|..|.:...:||
Human    72 CGCRVRV-----ELSNGEKRSRNRGP 92

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 23/75 (31%)
CSTF2_hinge 111..190 CDD:433869
CSTF_C 377..416 CDD:464130
SRSF3NP_003008.1 Sufficient for interaction with NXF1 and SRSP. /evidence=ECO:0000269|PubMed:12667464, ECO:0000269|PubMed:17036044, ECO:0000269|PubMed:32440474 1..90 26/87 (30%)
RRM_SRSF3 6..86 CDD:241089 26/83 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 81..164 4/12 (33%)
2 X approximate repeats, basic 119..164
Blue background indicates that the domain is not in the aligned region.

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