DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and myef2

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001025455.2 Gene:myef2 / 641483 ZFINID:ZDB-GENE-051120-114 Length:553 Species:Danio rerio


Alignment Length:317 Identity:66/317 - (20%)
Similarity:116/317 - (36%) Gaps:107/317 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSE-VGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYE 81
            ||:.||||:...:.:|::..| ||.|..::|..|.| ||.:|.|..|:||:|....|:..::.::
Zfish    83 VFISNIPYDKKWQAIKDLMREKVGEVTYVELFKDGE-GKSRGCGVVEFKDEEFVKKAIEVMSKHD 146

  Fly    82 IGGRTLRV-DNACTEKSRMEMQ---QLLQGPQVENPYGEPCEPEDAPELITKTVASLPPEQMYEL 142
            :.||.|.: ::...|.:|..:|   ::..|.:.::..|                .::||.     
Zfish   147 LNGRPLNIKEDPDGEHARRVLQRSGRMYGGGRGQDSSG----------------INIPPS----- 190

  Fly   143 MKQMKLCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQALG-MLFKAN--------QMPP 198
                    ::|          ||.:.:.::.|:...|       || .:|.||        ::..
Zfish   191 --------IAN----------NPNIPHEIISALQAGR-------LGATIFVANLDFKVGWKKLKE 230

  Fly   199 VLG--------------GNPHQGPGNHT------------MMGQQQVPQQQVQIPQQQ------- 230
            |.|              ....:|.|..|            |...|.:..:|:.:....       
Zfish   231 VFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAISMFNGQMLFDRQMHVKMDDKSLPPDD 295

  Fly   231 ----QQAPQPPMPVPGPGFPANVHPNDIDLRMVPG---GPMPMD------PRMMGRG 274
                :::||.|..:.|.|.........|:...:.|   ||..||      .||.|.|
Zfish   296 FRPVEKSPQLPRGLGGIGMGLGPGGQPINANCLSGSSMGPGGMDGGCSNMNRMSGMG 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 26/77 (34%)
CSTF2_hinge 111..190 CDD:433869 10/79 (13%)
CSTF_C 377..416 CDD:464130
myef2NP_001025455.2 RRM1_MYEF2 82..157 CDD:410059 26/74 (35%)
RRM2_MYEF2 212..287 CDD:410061 11/74 (15%)
RRM3_MYEF2 477..553 CDD:410063
Blue background indicates that the domain is not in the aligned region.

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