DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and CG34354

DIOPT Version :9

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster


Alignment Length:456 Identity:100/456 - (21%)
Similarity:152/456 - (33%) Gaps:98/456 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 QEQSIMDKSMR----SVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEY-- 64
            |:|.::..:.:    .:|||::..|...::||:.|:..|.:...::|.|.::.|.||:||..:  
  Fly    82 QQQQLVGNNSKPEQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVK 146

  Fly    65 -KDQETALSAMRNLNGYEIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEPEDA----- 123
             .:.|||::||   ||..:|.|::|. |..|.|.......:...|...:.......|.:.     
  Fly   147 KSEAETAITAM---NGQWLGSRSIRT-NWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCG 207

  Fly   124 -----------PELITKTVASLPPEQMYELMKQMKLCIV--SNPSEARQMLML--NPQLAYALLQ 173
                       .|::.||.:.....|...:.|......|  |....|...::.  |.::....::
  Fly   208 GINGALSGFLNEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTKEAATHAIVAVNNTEINQQPVK 272

  Fly   174 AMVVMRIVDPQQALGMLFKANQMPPVLGGNPHQG-PGNHTMMGQQQVPQQQVQIPQQQQQAPQPP 237
            ........||          |.|..:.||...|| |     .|............||......||
  Fly   273 CAWGKESGDP----------NHMSAIAGGALAQGFP-----FGSAAAAAAAAAYGQQVAGYWYPP 322

  Fly   238 MPVPGPGFPANVHPNDIDLRMVPGGPMPMDPRMMGRGMD---------------QDLRASLP--- 284
            .|......||:.                :.|....:||.               ..:...||   
  Fly   323 APTYPAAAPASA----------------LQPGQFLQGMQGFTYGQFAGYQQAGYMGMGVQLPGTW 371

  Fly   285 NPVPPPLMDPRARAQMPPQQQQGVPQAPP-----APYPSDPRQRPMDPRLRAGPGPQQQAP---- 340
            ..|||......|.|...||..|.|..|.|     ..||.  :|..:.|:|..   .:..||    
  Fly   372 QSVPPQPQLASAAAATAPQITQSVGSALPQAAGVVAYPM--QQFQVSPQLAE---DEWLAPSLLV 431

  Fly   341 --PQGIPQAPPPTQQQQAAAQQLQSRL-GAHGVLPSDASDQEKAALIMQVLQLSDEQIAQLPSEQ 402
              | |:...|....|||...||.|..| ..|....|....:|......|:.||...|:.|..|..
  Fly   432 XLPXGMAMYPTQQHQQQQQQQQQQQMLQQQHEQQTSGEYVKEPPYQTQQLQQLQHHQLQQQHSHN 496

  Fly   403 R 403
            :
  Fly   497 Q 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM <13..>112 CDD:223796 29/105 (28%)
RRM_CSTF2_CSTF2T 18..92 CDD:241115 25/76 (33%)
CSTF2_hinge 112..190 CDD:291025 12/97 (12%)
CSTF_C 377..416 CDD:291002 7/27 (26%)
CG34354NP_001097953.2 RRM2_TIA1_like 97..171 CDD:240799 25/77 (32%)
RRM3_TIA1_like 202..278 CDD:240800 9/75 (12%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
00.000

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