DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and hnrnpm

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001243560.1 Gene:hnrnpm / 555643 ZFINID:ZDB-GENE-030131-6898 Length:686 Species:Danio rerio


Alignment Length:77 Identity:29/77 - (37%)
Similarity:45/77 - (58%) Gaps:8/77 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPV--LSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGY 80
            :||.|:|::.|.:.||:.|:..|.|  ..:|:    |:||.||.|...:.:.|||..|.|.:|||
Zfish   611 IFVRNLPFDFTWKMLKDTFNSCGMVQYADIKM----ENGKSKGCGVVRFDNPETAERACRTMNGY 671

  Fly    81 EIGGRTL--RVD 90
            .:.||.:  |:|
Zfish   672 RLNGREIDVRID 683

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 29/77 (38%)
CSTF2_hinge 111..190 CDD:433869
CSTF_C 377..416 CDD:464130
hnrnpmNP_001243560.1 RRM1_hnRNPM 49..124 CDD:410058
RRM2_hnRNPM 204..279 CDD:410060
RRM3_hnRNPM 610..686 CDD:410062 29/77 (38%)
Blue background indicates that the domain is not in the aligned region.

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