DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and SC35

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster


Alignment Length:106 Identity:30/106 - (28%)
Similarity:45/106 - (42%) Gaps:20/106 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 MRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNG 79
            |.|:.|.|:.|..|.|.|:.:|...|.|..:.:..||.:.:.:||.|..:.|:..|..|:..::|
  Fly    22 MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDG 86

  Fly    80 YEIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEP 120
            ..:.||.|||..|                    .||.|..|
  Fly    87 RMLDGRELRVQMA--------------------RYGRPSSP 107

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 26/78 (33%)
CSTF2_hinge 111..190 CDD:433869 4/10 (40%)
CSTF_C 377..416 CDD:464130
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 22/71 (31%)
Blue background indicates that the domain is not in the aligned region.

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