DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CstF64 and SF2

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster


Alignment Length:73 Identity:22/73 - (30%)
Similarity:40/73 - (54%) Gaps:4/73 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
            ::|||:|.:...:.::::|.:.|.|..:.|  ....|.|  |.|.|::|...|..|::..:||:.
  Fly     9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDL--KNRRGPP--FAFVEFEDARDADDAVKARDGYDY 69

  Fly    83 GGRTLRVD 90
            .|..|||:
  Fly    70 DGYRLRVE 77

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 22/73 (30%)
CSTF2_hinge 111..190 CDD:433869
CSTF_C 377..416 CDD:464130
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 22/73 (30%)
RRM2_SRSF1_like 115..188 CDD:410013
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.