DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and hnrnpa1

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:XP_012812298.1 Gene:hnrnpa1 / 496507 XenbaseID:XB-GENE-493963 Length:362 Species:Xenopus tropicalis


Alignment Length:95 Identity:26/95 - (27%)
Similarity:48/95 - (50%) Gaps:7/95 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ADKAQEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKD 66
            |.|..||      :|.:|:|.:.:|.|:|.|:|.|.:.|.:....::.|..|.:.:||||..|..
 Frog     6 APKEPEQ------LRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYSS 64

  Fly    67 QETALSAMRNLNGYEIGGRTLRVDNACTEK 96
            .:...:|| :...:::.||.:....|.:.:
 Frog    65 TDEVDAAM-SARPHKVDGRVVEPKRAVSRE 93

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 22/83 (27%)
CSTF2_hinge 111..190 CDD:433869
CSTF_C 377..416 CDD:464130
hnrnpa1XP_012812298.1 RRM1_hnRNPA1 12..92 CDD:410154 23/86 (27%)
RRM_SF 105..184 CDD:473069
HnRNPA1 <315..>334 CDD:463312
Blue background indicates that the domain is not in the aligned region.

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