DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and tra2a

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:XP_012819962.1 Gene:tra2a / 448073 XenbaseID:XB-GENE-492325 Length:341 Species:Xenopus tropicalis


Alignment Length:80 Identity:27/80 - (33%)
Similarity:48/80 - (60%) Gaps:0/80 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 TEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEIGGRTLRVDNA 92
            ||..|:|:||..||:..:.:|:|:.:|:.:||.|..::..|.:..||.:.||.|:.||.:|||.:
 Frog   126 TERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIEDSREAMEHANGMELDGRRIRVDYS 190

  Fly    93 CTEKSRMEMQQLLQG 107
            .|:::......:..|
 Frog   191 ITKRAHTPTPGIYMG 205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 25/65 (38%)
CSTF2_hinge 111..190 CDD:433869
CSTF_C 377..416 CDD:464130
tra2aXP_012819962.1 RRM_TRA2A 110..193 CDD:410047 25/66 (38%)
Blue background indicates that the domain is not in the aligned region.

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