DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and srsf5

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001004783.1 Gene:srsf5 / 448003 XenbaseID:XB-GENE-487049 Length:272 Species:Xenopus tropicalis


Alignment Length:145 Identity:35/145 - (24%)
Similarity:60/145 - (41%) Gaps:35/145 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
            ||:|.:...|.|:.::..|...|.:..:.|        .:||||.|:.|...|..|:     ||:
 Frog     6 VFIGRLNPAAREKDVERFFKGYGRIRDIDL--------KRGFGFVEFDDPRDADDAV-----YEL 57

  Fly    83 GGRTLRVDNACTEKSRMEMQQLLQ--GPQ------------VENPYGEPCEPEDAPE--LITKTV 131
            .|:.|     |.|:..:|..:|..  ||:            ...|.|:...|....|  ||.:.:
 Frog    58 DGKEL-----CNERVTIEHARLRSRGGPRGLGRGRYNDRFSSRRPRGDRSAPPIRTENRLIVENL 117

  Fly   132 AS-LPPEQMYELMKQ 145
            :| :..:.:.:.|:|
 Frog   118 SSRVSWQDLKDFMRQ 132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 20/75 (27%)
CSTF2_hinge 111..190 CDD:433869 9/38 (24%)
CSTF_C 377..416 CDD:464130
srsf5NP_001004783.1 RRM1_SRSF5 5..73 CDD:410008 23/84 (27%)
RRM2_SRSF5 101..181 CDD:410158 7/32 (22%)
Blue background indicates that the domain is not in the aligned region.

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