DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and srsf5b

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001002610.1 Gene:srsf5b / 436883 ZFINID:ZDB-GENE-040718-354 Length:285 Species:Danio rerio


Alignment Length:75 Identity:19/75 - (25%)
Similarity:36/75 - (48%) Gaps:8/75 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
            :|:|.:...|.|:.::..|...|.:..:.|        .:||||.|:.|...|..|:..|:|.|:
Zfish     6 IFIGRLNPSAREKDVERFFKGYGRIRDIDL--------KRGFGFVEFDDPRDAEDAVYELDGKEL 62

  Fly    83 GGRTLRVDNA 92
            ....:.:::|
Zfish    63 CNERVTIEHA 72

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 19/75 (25%)
CSTF2_hinge 111..190 CDD:433869
CSTF_C 377..416 CDD:464130
srsf5bNP_001002610.1 RRM1_SRSF5 5..74 CDD:410008 19/75 (25%)
RRM2_SRSF5 101..181 CDD:410158
Blue background indicates that the domain is not in the aligned region.

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