DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and rbm34

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001002382.1 Gene:rbm34 / 436655 ZFINID:ZDB-GENE-040718-77 Length:411 Species:Danio rerio


Alignment Length:140 Identity:42/140 - (30%)
Similarity:73/140 - (52%) Gaps:25/140 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DKAQEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQ 67
            |:..:.|..|.. ||:||||:||:.:|..|:..|.|.|.:.:::||.||:||..||||:..::..
Zfish   240 DRVSQHSKHDHK-RSIFVGNLPYDISELPLQNHFQECGNIEAVRLVRDRDSGMGKGFGYVLFESP 303

  Fly    68 ETALSAMRNLNGYEIGGRTLRVDNACTEKS--------RMEMQQL---LQGPQVE---------- 111
            ::.:.|:: |||..:..|.:||..:..::.        :.|.|:.   |:||:.|          
Zfish   304 DSVMLALK-LNGSTLQQRKIRVKRSVKKEKEKKTPPGRKAEGQRTGGGLKGPKQEFRNNTGRKNF 367

  Fly   112 --NPYGEPCE 119
              ||..:|.:
Zfish   368 TKNPRNKPTQ 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 31/83 (37%)
CSTF2_hinge 111..190 CDD:433869 4/21 (19%)
CSTF_C 377..416 CDD:464130
rbm34NP_001002382.1 RRM1_RBM34 149..240 CDD:409828 42/140 (30%)
RRM2_RBM34 253..325 CDD:409829 28/72 (39%)
Blue background indicates that the domain is not in the aligned region.

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