DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CstF64 and Rox8

DIOPT Version :9

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001262897.1 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster


Alignment Length:481 Identity:93/481 - (19%)
Similarity:165/481 - (34%) Gaps:168/481 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 MDKSM-RSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAM 74
            ||:|. ::::|||:....:|:.|..:||.:|||.|.|::  ||.|... :.|.||.:.:.|.:|:
  Fly     1 MDESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKII--REPGNDP-YAFIEYSNYQAATTAL 62

  Fly    75 RNLNGYEIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEP----------EDAPELITK 129
            ..:|                  .|:.:::.::.....:|..:|...          :.:||:.|:
  Fly    63 TAMN------------------KRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETE 109

  Fly   130 TVASLPPEQMYELMKQMKLC-IVSNPSEARQMLMLNPQLAYALL------QAMVVMRIVDPQ--- 184
            |:     .:.:....::..| ||.:|...:..       .||.:      :|...::.::.|   
  Fly   110 TL-----REAFAPFGEISNCRIVRDPHTMKSK-------GYAFVSFVKKAEAENAIQAMNGQWIG 162

  Fly   185 -QALGMLFKANQMPPV--------LGGNPHQGPGNHT-MMGQQQVPQQQVQIPQQQQQAPQPPMP 239
             :::...:...::||.        .||....||||.: :.|.|:...::|    ..|.:|.....
  Fly   163 SRSIRTNWSTRKLPPPREPSKGGGQGGGMGGGPGNGSGVKGSQRHTFEEV----YNQSSPTNTTV 223

  Fly   240 VPGPGFPANVHPNDI-DLRMVPGGPMPMDPRMM-------------------------------- 271
            ..| |||.||..:|: ....|..||: .|.|:.                                
  Fly   224 YCG-GFPPNVISDDLMHKHFVQFGPI-QDVRVFKDKGFSFIKFVTKEAAAHAIEHTHNSEVHGNL 286

  Fly   272 -------------------------------------------GRGM------DQDLRASLPNPV 287
                                                       |.||      .|.:.|:....:
  Fly   287 VKCFWGKENGGDNSANNLNAAAAAAAASANVAAVAAANAAVAAGAGMPGQMMTQQQIAAATGAAI 351

  Fly   288 PPPLMDP-RARAQMPPQQQQGVPQAPPAPYPSDPRQRPMDPRLRAGPGPQQQAPPQG-IPQAPPP 350
            |..:|.| :..||.|...||.....|||.||:...              |.|...|| .|.|.|.
  Fly   352 PGQMMTPQQIAAQYPYAYQQMGYWYPPATYPTTQM--------------QTQYMQQGYYPYAYPT 402

  Fly   351 TQQQQAAAQQLQSRLGAHGVLPSDAS 376
            :.||......:|.....:.::|.:.:
  Fly   403 SAQQAGGVPCIQFSAAGYRMVPPNVA 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM <13..>112 CDD:223796 23/99 (23%)
RRM_CSTF2_CSTF2T 18..92 CDD:241115 21/73 (29%)
CSTF2_hinge 112..190 CDD:291025 14/98 (14%)
CSTF_C 377..416 CDD:291002 93/481 (19%)
Rox8NP_001262897.1 ELAV_HUD_SF 5..274 CDD:273741 61/307 (20%)
RRM1_TIA1_like 9..80 CDD:240798 22/91 (24%)
RRM2_TIA1_like 96..170 CDD:240799 12/85 (14%)
RRM3_TIA1_like 221..294 CDD:240800 12/74 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0724
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.