DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and B52

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster


Alignment Length:155 Identity:33/155 - (21%)
Similarity:56/155 - (36%) Gaps:45/155 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
            |:||.:||...|..|:..|...|....:.:        ..|:||.|::|...|..|:..|||.|:
  Fly     6 VYVGGLPYGVRERDLERFFKGYGRTRDILI--------KNGYGFVEFEDYRDADDAVYELNGKEL 62

  Fly    83 GGRTLRVDNA--------------------------CTEKSRMEMQQLLQGPQVENPYGEPCEPE 121
            .|..:.|:.|                          ..||::........||.:...|       
  Fly    63 LGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEY------- 120

  Fly   122 DAPELITKTVAS-LPPEQMYELMKQ 145
               .||.:.::| :..:.:.:.|:|
  Fly   121 ---RLIVENLSSRVSWQDLKDYMRQ 142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 23/101 (23%)
CSTF2_hinge 111..190 CDD:433869 6/36 (17%)
CSTF_C 377..416 CDD:464130
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 23/75 (31%)
RRM2_SRSF4_like 120..191 CDD:410012 6/33 (18%)
Blue background indicates that the domain is not in the aligned region.

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