DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and Rbp4

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster


Alignment Length:164 Identity:42/164 - (25%)
Similarity:67/164 - (40%) Gaps:42/164 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 RSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGY 80
            :.:|:|.:.....|..::|.||:.|||.|:||:.|||:|:.:.|||.|:.|..:|..|:.....:
  Fly   136 KRIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHW 200

  Fly    81 EIGGRTLRVDNACTEKSRMEMQ-----QLLQG---PQ--------VENP---------------- 113
            .:  :||......|:|:....:     .:..|   ||        ..||                
  Fly   201 IL--QTLVEVKRSTQKADRRFRFPIFSSVRAGYIPPQPATADSYNYNNPNYNPYLAQSVLPPSAF 263

  Fly   114 ------YGEPCEPEDAPELITKTVASLPPEQMYE 141
                  |..|..|:..|.  ....||||.:|:.|
  Fly   264 TNGWAHYVIPMAPKPTPG--QNMAASLPSQQLAE 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 25/77 (32%)
CSTF2_hinge 111..190 CDD:433869 12/53 (23%)
CSTF_C 377..416 CDD:464130
Rbp4NP_476935.1 RRM_SF 34..105 CDD:473069
RRM2_hnRNPA_like 137..209 CDD:409766 25/73 (34%)
Blue background indicates that the domain is not in the aligned region.

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