Sequence 1: | NP_477453.1 | Gene: | CstF64 / 42239 | FlyBaseID: | FBgn0027841 | Length: | 419 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_012814227.2 | Gene: | tia1 / 394890 | XenbaseID: | XB-GENE-1002876 | Length: | 389 | Species: | Xenopus tropicalis |
Alignment Length: | 305 | Identity: | 66/305 - (21%) |
---|---|---|---|
Similarity: | 115/305 - (37%) | Gaps: | 82/305 - (26%) |
- Green bases have known domain annotations that are detailed below.
Fly 4 KAQEQSIMDKSMRS-----VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCE 63
Fly 64 YKDQETALSAMRNLNGYEIGGRTLRVDNACTE----KSRME------------------------ 100
Fly 101 -------MQQLLQGPQVENPYGEPCEPEDAPELITKTVASLPPEQMYELMKQMKLCIVSNPSEAR 158
Fly 159 QMLMLNPQLAYALLQAMVVM--------RIVDPQQALGMLFKANQMPPVLGGNPHQGPGNHTMMG 215
Fly 216 QQ-----QVPQQQV--QIPQQQ--QQAPQPPMPVPGPGFPANVHP 251 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CstF64 | NP_477453.1 | RRM | <13..>112 | CDD:223796 | 33/138 (24%) |
RRM_CSTF2_CSTF2T | 18..92 | CDD:241115 | 24/73 (33%) | ||
CSTF2_hinge | 112..190 | CDD:291025 | 13/85 (15%) | ||
CSTF_C | 377..416 | CDD:291002 | |||
tia1 | XP_012814227.2 | RRM1_TIA1 | 8..81 | CDD:410027 | |
RRM2_TIA1 | 104..181 | CDD:410030 | 24/76 (32%) | ||
RRM3_TIAR | 214..286 | CDD:241064 | 14/94 (15%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |