DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and tia1

DIOPT Version :9

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:XP_012814227.2 Gene:tia1 / 394890 XenbaseID:XB-GENE-1002876 Length:389 Species:Xenopus tropicalis


Alignment Length:305 Identity:66/305 - (21%)
Similarity:115/305 - (37%) Gaps:82/305 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KAQEQSIMDKSMRS-----VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCE 63
            |....|.:..::||     ||||::..|.|.:.:|..|:..|.:...::|.|..:||.||:||..
 Frog    89 KDANSSSVVSTLRSQDHFHVFVGDLSPEITTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVS 153

  Fly    64 YKDQETALSAMRNLNGYEIGGRTLRVDNACTE----KSRME------------------------ 100
            :.::..|.:|:..:.|..:|||.:|.:.|..:    ||..|                        
 Frog   154 FFNKWDAENAIAQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLTYEEVVNQSSPSNCTVYC 218

  Fly   101 -------MQQLLQGPQVENPYGEPCEPEDAPELITKTVASLPPEQMYELMKQMKLCIVSNPSEAR 158
                   .:||::  |..:|:|:..|            ..:.|::.|..::     ..|:.|.|.
 Frog   219 GGVTSGLTEQLMR--QTFSPFGQIME------------VRVFPDKGYSFVR-----FSSHESAAH 264

  Fly   159 QMLMLNPQLAYALLQAMVVM--------RIVDPQQALGMLFKANQMPPVLGGNPHQGPGNHTMMG 215
            .::.:|.    ..::..||.        .:::|.|.:....:.:..||.  |...|..|....:|
 Frog   265 AIVSVNG----TTIEGHVVKCYWGKETPDMLNPVQQVSEASQISFPPPY--GQWGQWYGGAQQIG 323

  Fly   216 QQ-----QVPQQQV--QIPQQQ--QQAPQPPMPVPGPGFPANVHP 251
            |.     |:|...|  |...||  .|.|.......||.:.....|
 Frog   324 QYVPNGWQMPAYGVYGQAWSQQGYSQTPSSAATWVGPNYGVQPQP 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM <13..>112 CDD:223796 33/138 (24%)
RRM_CSTF2_CSTF2T 18..92 CDD:241115 24/73 (33%)
CSTF2_hinge 112..190 CDD:291025 13/85 (15%)
CSTF_C 377..416 CDD:291002
tia1XP_012814227.2 RRM1_TIA1 8..81 CDD:410027
RRM2_TIA1 104..181 CDD:410030 24/76 (32%)
RRM3_TIAR 214..286 CDD:241064 14/94 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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